Pairwise Alignments

Query, 1180 a.a., RecBCD enzyme subunit RecB from Escherichia coli HS(pFamp)R (ATCC 700891)

Subject, 1088 a.a., ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) from Echinicola vietnamensis KMM 6221, DSM 17526

 Score = 99.4 bits (246), Expect = 1e-24
 Identities = 193/878 (21%), Positives = 349/878 (39%), Gaps = 143/878 (16%)

Query: 20  LIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRSN 79
           + ++SAG+GKT+T+   YL+L L         +P+    +L VTFT  AT E++GRI   
Sbjct: 8   IYKSSAGSGKTYTLTLEYLKLALA--------QPMAFRGILAVTFTNKATQEMKGRILEV 59

Query: 80  IHELRIACL-RETTDNPLYERL-LEEIDDKAQAAQWLLLAERQMDEAAVFTIHGFCQRML 137
           +  L+     +E  D  L + L L+E   K++A+  L          +V TI  F Q+++
Sbjct: 60  LGRLKNEVRPQEFLDQQLMQHLQLDEEGLKSRASVVLSAILHDYANFSVSTIDSFFQKVV 119

Query: 138 NLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYPLP--------------------- 176
              A E  +  +  +  D++ +  +   D   +H    P                     
Sbjct: 120 RAFAREIDLQAKFDVALDQAAV-LERVVDRVVQHVMDDPYLHKWLVDYALTKIQEGRSWD 178

Query: 177 -----REIAQVVF-ETWKGPQALLRDINRYLQGEAPVIKAPPPDDETLASRHAQIVARID 230
                R++   +F E +K  Q L+R+     Q             + L  + +++    +
Sbjct: 179 IRSNIRDLGMEIFTENFKQYQQLIREFLSSEQNLDIFRNYLNTKKQALYKKASEMKMEAN 238

Query: 231 TVKQQW-----------RDAVGELDALIESSG-----IDRRKFNRSNQAKWIDKISAWAE 274
           +++QQ+           R      D L E +       + RK    N++KW  K S   +
Sbjct: 239 SIRQQFGLEWTDFPYGRRSFAMLFDKLGEHTNPIPELTESRKVAIDNESKWYSKTSKQKD 298

Query: 275 EETNSYQLPESLEKFSQRFLEDRTKAGGETPRHPLFEAIDQLLAEPLSIRDLVITRALAE 334
              ++Y     L    + F+  R +          ++AID         R+L     L E
Sbjct: 299 AIISAYH--AGLGDIYREFVPLRKE-------WLTYQAIDMNFYAYGIFRNL-----LEE 344

Query: 335 IRETVAREKRRRGELGFDDMLSRLDSALRSESGEVLAAAIRTRFPVAMIDEFQDTDPQQY 394
           +R+     K     L   D    L    +      +   +  ++   +IDEFQDT   Q+
Sbjct: 345 LRDL----KDEENILMISDANDFLKEITKENDAPFIYEKVGNQYKHFLIDEFQDTSGFQW 400

Query: 395 RIFRRIWHHQ--PETALLLIGDPKQAIYAFRGADIFTYMKARSEVHAHYT-----LDTNW 447
             F+ +  +    E   L++GD KQ+IY +RG D+   ++   E     +     LDTN+
Sbjct: 401 DSFKPLLENSLGYEHTNLVVGDVKQSIYRWRGGDMKLLLEKVEEDIGPSSIQVKGLDTNY 460

Query: 448 RSAPGMVNSVNKLFS----QTDDAFMFREIPFIPVKSAGKNQALRFVFKGETQPAMKMWL 503
           RS P +V   N LFS    Q +  F          +    +Q    + K     A K+  
Sbjct: 461 RSLPNVVAFNNALFSALPAQLESTF----------ERETGHQRPGILTKAYQDVAQKVPS 510

Query: 504 MEGESCGVGDYQSTMAQVCAAQIRDWLQAGQRGEAL------LMNGDDARPVRASDISVL 557
            + E    GD++  +         +  + G     L      +M   D +  R  DI+ L
Sbjct: 511 AKNE----GDFKGLVRMEFLETSNEEEEPGYEEAVLAKIPEMVMTLQD-QGYRPKDIAFL 565

Query: 558 VRSRQEAAQVRDALTLL--EIPSVYLS----NRDSVF--ETLEAQEMLWLLQAVMTPERE 609
           VR + + A + DAL     E P +  S    + +S+F  +    + ++  L  +  P   
Sbjct: 566 VRKKHQGAMITDALMAYKHEHPELEYSFDVVSDESMFLSKAATVKALIAALNYLADPADP 625

Query: 610 NTLRSA-LATSMMGLNALDIETLNN-DEHAWDVVVEEFDGYRQIWRKRGVMPMLRALMSA 667
              ++     S +    +  E  ++ ++ AW  + E+   + +  ++   +P++  L   
Sbjct: 626 VPFQTMWFYWSSLNGKPISHEVFSSLEKPAW--LAEKIAAFEKEEQRIARLPLMELL--- 680

Query: 668 RNIAENLLATAGGERRLTDILHISELLQEAGTQLESEHALVRWLSQHILEPDSNASSQQM 727
               E L+   G     T++ +IS   +     + +  A    LS  +   + N+  + +
Sbjct: 681 ----EELVDILGFNDLRTELAYISGFKEAVYDYVANNRA---DLSGFLNWWEENSEKRTV 733

Query: 728 RLESDKHLVQIVTIHKSKGLEYPLVWLPFITNFRVQEQA--------FYHDRHSFEAVLD 779
           ++      + I+TIHKSKGL+Y +V +PF+T +R+ + +        F       EAV+ 
Sbjct: 734 KIPEGHDAMPIMTIHKSKGLQYKVVLMPFLT-WRIVDYSKDNIIWSPFRDTAEDVEAVIP 792

Query: 780 LNAAPESVD-LAEAERLAE-------DLRLLYVALTRS 809
           L    E  D + +   L E        L ++YVALTR+
Sbjct: 793 LTLKKELADSIFQPVHLEEVTMAYLDTLNMIYVALTRA 830