Pairwise Alignments

Query, 1180 a.a., RecBCD enzyme subunit RecB from Escherichia coli HS(pFamp)R (ATCC 700891)

Subject, 752 a.a., Superfamily I DNA and RNA helicases from Echinicola vietnamensis KMM 6221, DSM 17526

 Score = 76.6 bits (187), Expect = 7e-18
 Identities = 103/504 (20%), Positives = 196/504 (38%), Gaps = 93/504 (18%)

Query: 332 LAEIRETVAREKRRRGELGFDDMLSRLDSALRSESGEVLAAAIRTRFPVAMIDEFQDTDP 391
           + EI     +   +   + FDD+L   +   R      +    + RF   ++DEFQDT+ 
Sbjct: 174 MGEIYRAYQKRLFKSSAMDFDDLLFNTNVLFRDHPD--VLNKYQQRFRYVLVDEFQDTNL 231

Query: 392 QQYRIFRRIWH-HQPETALLLIGDPKQAIYAFRGAD---IFTYMKARSEVHAHYTLDTNW 447
            QY I +++   HQ    + ++GD  Q+IYAFRGAD   I  + K   ++H    L+ N+
Sbjct: 232 SQYLITKKLAAVHQN---ICVVGDDAQSIYAFRGADIQNILNFEKDYPDLHV-VKLEQNY 287

Query: 448 RSAPGMVNSVNKLFSQTDDAFMFREIPFIPVKSAGKNQALRFVFKGETQPAMKMWLMEGE 507
           RS   +V + N +                             + K + Q    +W   G 
Sbjct: 288 RSTKNIVEAANSI-----------------------------IEKNKAQLKKNVWTQNGN 318

Query: 508 SCGVGDYQSTMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQV 567
              +   +S              + G+   + +    + + ++ SD ++L R+  ++  +
Sbjct: 319 GDLIELIKSASDN----------EEGRMVASTIFEEKNNKKLQNSDFAILYRTNSQSRAL 368

Query: 568 RDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALD 627
            +AL  + I S  +    S ++  E ++++   + V+  + E   +  +     G+    
Sbjct: 369 EEALRKMNI-SYKIVGGLSFYQRKEIKDLMAYFRYVVNQDDEEAFKRIINYPKRGIGLSS 427

Query: 628 IETL-----NNDEHAWDVVV--EEFDGYRQIWRKRGVMPMLRALMS--ARNIAENLLATA 678
           +E +      +D   W VV     F   R          M+++      R  A    +T 
Sbjct: 428 VEKMMVAAYEHDIPLWQVVTNSSSFLSGRASNSVSDFATMIKSFQMEVERKDAYEAASTI 487

Query: 679 GGERRLTDILHISELLQEAGTQLESEHALVRWLSQHILEPDS-----NASSQQMRLESDK 733
             +  L   L+  + + E   + E+   L+  + +++  P++      A  Q++ L +D 
Sbjct: 488 AKQSGLLRELYEDKTI-EGLNRYENVQELLNAIKEYVDNPENEDKNLGAFLQEIALLTDN 546

Query: 734 -------HLVQIVTIHKSKGLEYPLVWLPFITNFRVQEQAFYHDRHSFEAVLDLNAAPES 786
                    V ++TIH SKGLE+                     R  F   L+ +  P  
Sbjct: 547 DRDKDEMDAVTLMTIHSSKGLEF---------------------RQVFVVGLEEDLFPSQ 585

Query: 787 VDLAEAERLAEDLRLLYVALTRSV 810
           + +   E L E+ RL YVA TR++
Sbjct: 586 MMMQSREDLEEERRLFYVATTRAM 609



 Score = 28.5 bits (62), Expect = 0.002
 Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 8/61 (13%)

Query: 16 QGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGR 75
          +G  +I A AG+GKT  +      L+          + +   ++L +TFT  A +E+R R
Sbjct: 19 EGPLMIIAGAGSGKTRVLTFRIAHLIRA--------KNVDPFQILALTFTNKAASEMRNR 70

Query: 76 I 76
          I
Sbjct: 71 I 71