Pairwise Alignments

Query, 838 a.a., Outer membrane usher protein YraJ from Escherichia coli HS(pFamp)R (ATCC 700891)

Subject, 842 a.a., type 1 fimbriae anchoring protein FimD from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score =  634 bits (1635), Expect = 0.0
 Identities = 346/828 (41%), Positives = 511/828 (61%), Gaps = 32/828 (3%)

Query: 33  MLCTTANAEEYYFDPIMLETTKSGMQTTDLSRF-SKKYAQLPGTYQVDIWLNKKKVSQKK 91
           M+  T  A    F+P  LE      Q  DLS + S K   LPG Y+V + +N+KK+  + 
Sbjct: 23  MIAGTLPAYAGTFNPRFLEDVPGIDQHVDLSMYESNKAEHLPGKYRVSVVVNEKKMESRT 82

Query: 92  ITFTANAE-------QLLQPQFTVEQLRELGIKVDEIPALAEKDDDSVINSLEQIIPGTA 144
           + F A  E       + L P  +  QL ++G+++D  PAL     ++ + + + IIP  A
Sbjct: 83  LEFKAATEAQRAKMGESLVPCLSRVQLEDMGVRIDSFPALKMAPPEACV-AFDDIIPQAA 141

Query: 145 AEFDFNHQRLNLSIPQIALYRDARGYVSPSRWDDGIPTLFTNYSFTGSDNCY-----RQG 199
           + FDF  Q L +S PQ A+ + ARG V  S+WD+G+  L  +Y+F+GS+  Y        
Sbjct: 142 SHFDFADQTLIMSFPQAAMKQTARGTVPESQWDEGVNALLVDYNFSGSNASYDAHDSETS 201

Query: 200 NRSQRQYLNMQNGANFGPWRLRNYSTWTRNDQTSSWNTISSYLQRDIKALKSQLLLGESA 259
             S   YLN+++G N G WRLRNYSTWTRND  ++W+ I + L R I  LKSQL LG+++
Sbjct: 202 YNSDSYYLNLRSGMNLGAWRLRNYSTWTRNDGNNTWDNIGTSLSRAIVPLKSQLTLGDTS 261

Query: 260 TSGSIFSSYTFTGVQLASDDNMLPNSQRGFAPTVRGIANSSAIVTIRQNGYVIYQSNVPA 319
           T+G IF S    GVQL SD+ MLP+SQRGFAP +RGIA S+A VT+ QN YVIY++ V  
Sbjct: 262 TAGDIFDSVQMRGVQLTSDEEMLPDSQRGFAPVIRGIAKSNAEVTVEQNNYVIYRTFVQP 321

Query: 320 GAFEINDLYPSSNSGDLEVTIEESDGTQRRFIQPYSSLPMMQRPGHLKYSATAGRYRADA 379
           GAFEINDLYP+SNSGDL VTI+ESDG++++F+QP+SS+ ++QR GHLKYS +AG YRA  
Sbjct: 322 GAFEINDLYPTSNSGDLTVTIKESDGSEQKFVQPFSSVALLQREGHLKYSLSAGEYRA-G 380

Query: 380 NSDSKEPEFAEATAIYGLNNTFTLYGGLLGSEDYYALGIGIGGTLGALGALSMDINRADT 439
           N +S EP+F +  A+YGL   FT+YGG + S+DYY+L  G+G   G +GA+S+D+ +A +
Sbjct: 381 NYNSAEPKFGQLDAMYGLPYGFTVYGGAIFSDDYYSLAGGLGKNFGYIGAISIDVTQAKS 440

Query: 440 QFDNQHSFHGYQWRTQYIKDIPETNTNIAVSYYRYTNDGYFSFDEANTRNWNYNS----- 494
           +  N+ +  G  +R  Y K    + T+  +  Y+Y+  GY++F EA     + +S     
Sbjct: 441 KLANEENSEGQSYRFLYSKSF-NSGTDFRLLGYKYSTSGYYTFQEATDVRSDADSSYSQY 499

Query: 495 RQKSEIQFNISQTIFDGVSLYASGSQQDYWGNNDKNRNISVGVSGQQWGVGYSLNYQYSR 554
            ++S+IQ N++Q +    S+Y + +QQDYW +  K R+++ G +G+   V YS+ Y +++
Sbjct: 500 HKRSQIQGNVTQQLGAWGSVYFNVTQQDYWNDEGKQRSLNAGYNGRIGRVNYSVAYTWTK 559

Query: 555 YTD-QNNDRALSLNLSIPLER-WLPRSRVSYQMTSQKDRPTQHEMRLDGSLLDDGRLSYS 612
             +   +DR LS ++SIPL R W      +Y +T+ +   T  ++ + G+ L+D  L+YS
Sbjct: 560 SPEWDESDRLLSFSMSIPLGRVW-----SNYHLTTDQHGRTNQQLGVSGTALEDHNLNYS 614

Query: 613 LEQSLDDDNNHNS-SLNASYRSPYGTFSAGYSYGNDSSQYNYGVTGGVVIHPHGVTLSQY 671
           +++    +   NS S+N  Y+   G+ S GY+Y  D  Q NYG+ GGV+ H  G+TLSQ 
Sbjct: 615 VQEGYGSNGVGNSGSVNLDYQGGVGSASLGYNYNRDGQQVNYGLRGGVIAHSEGITLSQP 674

Query: 672 LGNAFALIDANGASGVRIQNYPGIATDPFGYAVVPYLTTYQENRLSVDTTQLPDNVDLEQ 731
           LG + A+I A GA G  + N  G+  D  G AVVPYLT Y+E  +S+ +  L + VDL+ 
Sbjct: 675 LGESMAIISAPGARGAHVINNGGVEVDWMGNAVVPYLTPYRETEVSLRSDSLNNQVDLDT 734

Query: 732 TTQFVVPNRGAMVAARFNANIGYRVLVTVSDRNGKPLPFGALASNDETGQQ--SIVDEGG 789
            +  VVP RGA+V ARF+  +GYRVL+ ++  NGK +PFGA A+  +T ++  SIV E G
Sbjct: 735 ASVNVVPTRGAIVRARFDTRVGYRVLMNLTQANGKAVPFGATATLLDTTKESSSIVGEDG 794

Query: 790 ILYLSGISSKSQSWTVRWGNQADQQCQFAFSTPDSEPTTSVLQGTAQC 837
            LY+SG+  K  +  V WG    QQC+ AF+ P+ +  T V+   A C
Sbjct: 795 QLYISGMPEKG-ALQVNWGKDQAQQCRVAFTLPEQQDNTGVVMANAVC 841