Pairwise Alignments

Query, 838 a.a., Outer membrane usher protein YraJ from Escherichia coli HS(pFamp)R (ATCC 700891)

Subject, 807 a.a., FIG034929: Fimbriae usher protein SafC from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score =  469 bits (1208), Expect = e-136
 Identities = 289/809 (35%), Positives = 436/809 (53%), Gaps = 44/809 (5%)

Query: 61  DLSRFSKKYAQLPGTYQVDIWLNKKKVSQKKITFTANAE----QLLQPQFTVEQLRELGI 116
           D+S F++   Q PGTY+VD+ +N K+V  + + F    +     +L P  TV QL   G+
Sbjct: 10  DMSLFNQGVQQ-PGTYRVDVMVNGKRVDTRDVVFKLEKDGQGTPVLAPCLTVSQLSRYGV 68

Query: 117 KVDEIPAL--AEKDDDSVINSLEQIIPGTAAEFDFNHQRLNLSIPQIALYRDARGYVSPS 174
           K ++ P L  A K  D   +     IP   A  D N+Q+L LSIPQ+AL  + +G     
Sbjct: 69  KTEDYPQLWKAAKPPDECADLTA--IPQAKAVLDINNQQLQLSIPQLALRPEFKGIAPED 126

Query: 175 RWDDGIPTLFTNYSFTGSDNCYRQG--NRSQRQYLNMQNGANFGPWRLRNYSTWTRNDQT 232
            WDDGIP    NYS   +   Y+     R    ++ +Q G N G WR+RN ++W R+ Q 
Sbjct: 127 LWDDGIPAFLMNYSARTTQTDYKMDMVGRDNSSWVQLQPGINIGAWRVRNATSWQRSSQL 186

Query: 233 SS-WNTISSYLQRDIKALKSQLLLGESATSGSIFSSYTFTGVQLASDDNMLPNSQRGFAP 291
           S  W    +Y +R + +LKS+L LG+  + G IF S  FTGV LASDDNM+P S+R FAP
Sbjct: 187 SGKWQAAYTYAERGLYSLKSRLTLGQKTSQGEIFDSVPFTGVMLASDDNMVPYSERQFAP 246

Query: 292 TVRGIANSSAIVTIRQNGYVIYQSNVPAGAFEINDLYPSSNSGDLEVTIEESDGTQRRFI 351
            VRGIA + A V ++QNGY IY + V  G F + DL  + +SGDL VT+ E+DG+ + F+
Sbjct: 247 VVRGIARTQARVEVKQNGYTIYNTTVAPGPFALRDLSVTDSSGDLHVTVWEADGSTQMFV 306

Query: 352 QPYSSLPMMQRPGHLKYSATAGRYRADANSDSKEPEFAEATAIYGLNNTFTLYGGLLGSE 411
            PY +  +    G+LKYS  AGRYR+ ++S + + + A+AT +YGL    T YGG+  + 
Sbjct: 307 VPYQTPAIALHQGYLKYSLLAGRYRS-SDSATDKAQIAQATLMYGLPWNLTAYGGIQSAT 365

Query: 412 DYYALGIGIGGTLGALGALSMDINRADTQFDNQHSFHGYQWRTQYIKDIPETNTNIAVSY 471
            Y A  +G+GG+LG  G+LS+D +   +Q   +    G  WR +Y   +  T TN  ++ 
Sbjct: 366 HYQAALLGLGGSLGRWGSLSVDGSDTHSQRQGEAVQQGASWRLRYSNQLTATGTNFFLTR 425

Query: 472 YRYTNDGYFSFDEA---------NTRNWNYNSRQKSEIQFNISQTIFDGV-SLYASGSQQ 521
           ++Y + GY +  +             +W  N +  S     +SQ+    + +L  +GS+ 
Sbjct: 426 WQYASQGYNTLSDVLDSYRHNGNRLWSWRENLQPSSRTTLMLSQSWGRHLGNLSLTGSRT 485

Query: 522 DYWGN---NDKNRNISVGVSGQQWGVGYSLNYQYSRYTDQN----NDRALSLNLSIPLER 574
           D W N   +D +  +S G S    G   SLN+  +R   +N     +   SL  S+PL R
Sbjct: 486 D-WRNRPGHDDSYGLSWGTS--IGGGSLSLNWNQNRTLWRNGAHRKENITSLWFSMPLSR 542

Query: 575 WLPRS-RVSYQMTSQKDRPTQHEMRLDGSLLDDGRLSYSLEQSLDDD----NNHNSSLNA 629
           W   +   S+QMTS        ++ ++G      +L + + QS   D      +NS+L+ 
Sbjct: 543 WTGNNVSASWQMTSPSHGGQTQQVGVNGEAFSQ-QLDWEVRQSYRADAPPGGGNNSALHL 601

Query: 630 SYRSPYGTFSAGYSYGNDSSQYNYGVTGGVVIHPHGVTLSQYLGNAFALIDANGASGVRI 689
           ++   YG     YSY     Q    + GG+VIH HGVTL Q L  + AL++A GASGV +
Sbjct: 602 AWNGDYGLLGGDYSYSRAMRQMGVNIAGGIVIHHHGVTLGQPLQGSVALVEAPGASGVPV 661

Query: 690 QNYPGIATDPFGYAVVPYLTTYQENRLSVDTTQLPDNVDLEQTTQFVVPNRGAMVAARFN 749
             +PG+ TD  G   V  L  YQEN +S+D ++LPD+ ++ QT   VVP  GA+V A+F+
Sbjct: 662 GGWPGVKTDFRGDTTVGNLNVYQENTVSLDPSRLPDDAEVTQTDVRVVPTEGAVVEAKFH 721

Query: 750 ANIGYRVLVTVSDRNGKPLPFGA-LASNDETGQQSIVDEGGILYLSGISSKSQSWTVRWG 808
             IG R L+T+   +G  +PFGA +  N + G  ++VD    +YL+G++ K +  TV+WG
Sbjct: 722 TRIGARALMTLKREDGSAIPFGAQVTVNGQDGSAALVDTDSQVYLTGLADKGE-LTVKWG 780

Query: 809 NQADQQCQFAFSTPDSEPTTSVLQGTAQC 837
               QQC+  +  P  +    + Q +  C
Sbjct: 781 ---AQQCRVNYRLPAHKGIAGLYQMSGLC 806