Pairwise Alignments

Query, 838 a.a., Outer membrane usher protein YraJ from Escherichia coli HS(pFamp)R (ATCC 700891)

Subject, 878 a.a., fimbrial usher outer membrane porin protein; FimCD chaperone-usher from Escherichia coli BL21

 Score =  572 bits (1475), Expect = e-167
 Identities = 319/843 (37%), Positives = 476/843 (56%), Gaps = 52/843 (6%)

Query: 39  NAEEYYFDPIMLETTKSGMQTTDLSRFSKKYAQLPGTYQVDIWLNKKKVSQKKITF-TAN 97
           ++ + YF+P  L      +   DLSRF       PGTY+VDI+LN   ++ + +TF T +
Sbjct: 43  SSADLYFNPRFLADDPQAV--ADLSRFENGQELPPGTYRVDIYLNNGYMATRDVTFNTGD 100

Query: 98  AEQLLQPQFTVEQLRELGIKVDEIPALAEKDDDSVINSLEQIIPGTAAEFDFNHQRLNLS 157
           +EQ + P  T  QL  +G+    +  +    DD+ +  L  ++    A  D   QRLNL+
Sbjct: 101 SEQGIVPCLTRAQLASMGLNTASVAGMNLLADDACV-PLTTMVQDATAHLDVGQQRLNLT 159

Query: 158 IPQIALYRDARGYVSPSRWDDGIPTLFTNYSFTGSDNCYRQGNRSQRQYLNMQNGANFGP 217
           IPQ  +   ARGY+ P  WD GI     NY+F+G+    R G  S   YLN+Q+G N G 
Sbjct: 160 IPQAFMSNRARGYIPPELWDPGINAGLLNYNFSGNSVQNRIGGNSHYAYLNLQSGLNIGA 219

Query: 218 WRLRNYSTWTRNDQTSS------WNTISSYLQRDIKALKSQLLLGESATSGSIFSSYTFT 271
           WRLR+ +TW+ N    S      W  I+++L+RDI  L+S+L LG+  T G IF    F 
Sbjct: 220 WRLRDNTTWSYNSSDRSSGSKNKWQHINTWLERDIIPLRSRLTLGDGYTQGDIFDGINFR 279

Query: 272 GVQLASDDNMLPNSQRGFAPTVRGIANSSAIVTIRQNGYVIYQSNVPAGAFEINDLYPSS 331
           G QLASDDNMLP+SQRGFAP + GIA  +A VTI+QNGY IY S VP G F IND+Y + 
Sbjct: 280 GAQLASDDNMLPDSQRGFAPVIHGIARGTAQVTIKQNGYDIYNSTVPPGPFTINDIYAAG 339

Query: 332 NSGDLEVTIEESDGTQRRFIQPYSSLPMMQRPGHLKYSATAGRYRADANSDSKEPEFAEA 391
           NSGDL+VTI+E+DG+ + F  PYSS+P++QR GH +YS TAG YR+  N+  ++P F ++
Sbjct: 340 NSGDLQVTIKEADGSTQIFTVPYSSVPLLQREGHTRYSITAGEYRS-GNAQQEKPRFFQS 398

Query: 392 TAIYGLNNTFTLYGGLLGSEDYYALGIGIGGTLGALGALSMDINRADTQFDNQHSFHGYQ 451
           T ++GL   +T+YGG   ++ Y A   GIG  +GALGALS+D+ +A++   +     G  
Sbjct: 399 TLLHGLPAGWTIYGGTQLADRYRAFNFGIGKNMGALGALSVDMTQANSTLPDDSQHDGQS 458

Query: 452 WRTQYIKDIPETNTNIAVSYYRYTNDGYFSFDEAN----------------------TRN 489
            R  Y K + E+ TNI +  YRY+  GYF+F +                        T  
Sbjct: 459 VRFLYNKSLNESGTNIQLVGYRYSTSGYFNFADTTYSRMNGYNIETQDGVIQVKPKFTDY 518

Query: 490 WNYNSRQKSEIQFNISQTIFDGVSLYASGSQQDYWGNNDKNRNISVGVSGQQWGVGYSLN 549
           +N    ++ ++Q  ++Q +    +LY SGS Q YWG ++ +     G++     + ++L+
Sbjct: 519 YNLAYNKRGKLQLTVTQQLGRTSTLYLSGSHQTYWGTSNVDEQFQAGLNTAFEDINWTLS 578

Query: 550 YQYSRYT-DQNNDRALSLNLSIPLERWL--------PRSRVSYQMTSQKDRPTQHEMRLD 600
           Y  ++    +  D+ L+LN++IP   WL          +  SY M+   +    +   + 
Sbjct: 579 YSLTKNAWQKGRDQMLALNVNIPFSHWLRSDSKSQWRHASASYSMSHDLNGRMTNLAGVY 638

Query: 601 GSLLDDGRLSYSLEQSLDDDNNHNSS----LNASYRSPYGTFSAGYSYGNDSSQYNYGVT 656
           G+LL+D  LSYS++       + NS        +YR  YG  + GYS+ +D  Q  YGV+
Sbjct: 639 GTLLEDNNLSYSVQTGYAGGGDGNSGSTGYATLNYRGGYGNANIGYSHSDDIKQLYYGVS 698

Query: 657 GGVVIHPHGVTLSQYLGNAFALIDANGASGVRIQNYPGIATDPFGYAVVPYLTTYQENRL 716
           GGV+ H +GVTL Q L +   L+ A GA   +++N  G+ TD  GYAV+PY T Y+ENR+
Sbjct: 699 GGVLAHANGVTLGQPLNDTVVLVKAPGAKDAKVENQTGVRTDWRGYAVLPYATEYRENRV 758

Query: 717 SVDTTQLPDNVDLEQTTQFVVPNRGAMVAARFNANIGYRVLVTVSDRNGKPLPFGALASN 776
           ++DT  L DNVDL+     VVP RGA+V A F A +G ++L+T++  N KPLPFGA+ ++
Sbjct: 759 ALDTNTLADNVDLDNAVANVVPTRGAIVRAEFKARVGIKLLMTLT-HNNKPLPFGAMVTS 817

Query: 777 DETGQQSIVDEGGILYLSG--ISSKSQSWTVRWGNQADQQCQFAFSTPDSEPTTSVLQGT 834
           + +    IV + G +YLSG  ++ K Q   V+WG + +  C   +  P       + Q +
Sbjct: 818 ESSQSSGIVADNGQVYLSGMPLAGKVQ---VKWGEEENAHCVANYQLPPESQQQLLTQLS 874

Query: 835 AQC 837
           A+C
Sbjct: 875 AEC 877