Pairwise Alignments

Query, 838 a.a., Outer membrane usher protein YraJ from Escherichia coli HS(pFamp)R (ATCC 700891)

Subject, 866 a.a., putative outer membrane fimbrial subunit export usher protein from Escherichia coli BL21

 Score =  568 bits (1463), Expect = e-166
 Identities = 337/869 (38%), Positives = 494/869 (56%), Gaps = 48/869 (5%)

Query: 11  RTPKQLALIIKRCLPMVLTGSGMLCTTA-NAE-EYYFDPIMLETTKSGMQTTDLSRFSKK 68
           RT +Q +L+    +P  + G  +  + A NA+ E +FDP   +   S     DLSRF K 
Sbjct: 3   RTHRQHSLLSSGGVPSFIGGLVVFVSAAFNAQAETWFDPAFFKDDPS--MVADLSRFEKG 60

Query: 69  YAQLPGTYQVDIWLNKKKVSQKKITFTA-NAEQLLQPQFTVEQLRELGIKVDEIPALAEK 127
               PG Y+VDI LN+  V  + + F     E+ +    T E L  +G+  D  PA  + 
Sbjct: 61  QKITPGGYRVDIVLNQTIVDTRNVNFVEITPEKGIAACLTTESLDAMGVNTDAFPAFKQL 120

Query: 128 DDDSVINSLEQIIPGTAAEFDFNHQRLNLSIPQIALYRDARGYVSPSRWDDGIPTLFTNY 187
           D  + +  L +IIP  +  F+ N  RL +S+PQIA+  +ARGYV P RWD+GI  L   Y
Sbjct: 121 DKQACV-PLAEIIPDASVTFNVNKLRLEISVPQIAIKSNARGYVPPERWDEGINALLLGY 179

Query: 188 SFTGSDNCYRQGNRSQRQ--YLNMQNGANFGPWRLRNYSTWTRND-QTSSWNTISSYLQR 244
           SF+G+++ +   +       +LN+ +G N GPWRLRN STW+R+  QT+ W  +SSYLQR
Sbjct: 180 SFSGANSIHSSADSDSGDSYFLNLNSGVNLGPWRLRNNSTWSRSSGQTAEWKNLSSYLQR 239

Query: 245 DIKALKSQLLLGESATSGSIFSSYTFTGVQLASDDNMLPNSQRGFAPTVRGIANSSAIVT 304
            +  LK +L +G+  T+G  F S +F GVQLASDDNMLP+S +GFAP VRGIA S+A +T
Sbjct: 240 AVIPLKGELTVGDDYTAGDFFDSVSFRGVQLASDDNMLPDSLKGFAPVVRGIAKSNAQIT 299

Query: 305 IRQNGYVIYQSNVPAGAFEINDLYPSSNSGDLEVTIEESDGTQRRFIQPYSSLPMMQRPG 364
           I+QNGY IYQ+ V  GAFEI+DLY +S+SGDL V I+E+DG+   +  P+SS+P++QR G
Sbjct: 300 IKQNGYTIYQTYVSPGAFEISDLYSTSSSGDLLVEIKEADGSVNSYSVPFSSVPLLQRQG 359

Query: 365 HLKYSATAGRYRADANSDSKEPEFAEATAIYGLNNTFTLYGGLLGSEDYYALGIGIGGTL 424
            +KY+ T  +YR ++N + +E +FA+AT  +G     T YGG   +E Y A   G+G   
Sbjct: 360 RIKYAVTLAKYRTNSN-EQQESKFAQATLQWGGPWGTTWYGGGQYAEYYRAAMFGLGFNF 418

Query: 425 GALGALSMDINRADTQFDNQHSFHGYQWRTQYIKDIPETNTNIAVSYYRYTNDGYFSF-- 482
           G  GA+S D  +A +   +Q    G  +R  Y K +    TN  +  YRY+  G+++   
Sbjct: 419 GDFGAISFDATQAKSTLADQSEHKGQSYRFLYAKTLNHLGTNFQLMGYRYSTSGFYTLSD 478

Query: 483 --------------DEANTRNWN--YN--SRQKSEIQFNISQTIFDGVSLYASGSQQDYW 524
                         D+ +T  W+  YN    ++ ++Q NISQ + +  S Y SGSQQ YW
Sbjct: 479 TMYKHMDGYEFNDGDDEDTPMWSRYYNLFYTKRGKLQVNISQQLGEYGSFYLSGSQQTYW 538

Query: 525 GNNDKNRNISVGVSGQQWGVGYSLNYQYSRYTDQ-NNDRALSLNLSIPLERWLPRSRVSY 583
             + ++R +  G + Q   +   +++ YS+   Q + D+  +LN S+PL   LPRS  SY
Sbjct: 539 HTDQQDRLLQFGYNTQIKDLSLGISWNYSKSRGQPDADQVFALNFSLPLNLLLPRSNDSY 598

Query: 584 Q-------MTS----QKDRPTQHEMRLDGSLLDDGRLSYSLEQSLDDD-NNHNSSLNASY 631
                   MTS      +  T   + L  +LLDDG LSYS++Q  + +    N S +  Y
Sbjct: 599 TRKKNYAWMTSNTSIDNEGHTTQNLGLTETLLDDGNLSYSVQQGYNSEGKTANGSASMDY 658

Query: 632 RSPYGTFSAGYSYGNDSS--QYNYGVTGGVVIHPHGVTLSQYLGNAFALIDANGASGVRI 689
           +  +     GY+Y ++ S  Q NY ++G +V H  G+TL Q LG    LI A GA   R+
Sbjct: 659 KGAFADARVGYNYSDNGSQQQLNYALSGSLVAHSQGITLGQSLGETNVLIAAPGAENTRV 718

Query: 690 QNYPGIATDPFGYAVVPYLTTYQENRLSVDTTQLPDNVDLEQTTQFVVPNRGAMVAARFN 749
            N  G+ TD  GY VVPY T+Y+ENR+++D   L  NVDLE     VVP +GA+V A FN
Sbjct: 719 ANSTGLKTDWRGYTVVPYATSYRENRIALDAASLKRNVDLENAVVNVVPTKGALVLAEFN 778

Query: 750 ANIGYRVLVTVSDRNGKPLPFGALASNDETGQQS-IVDEGGILYLSGISSKSQSWTVRWG 808
           A+ G RVL+  S + G PL FGA+A+ D     S I+D+ G LY++G+ +K  + +VRWG
Sbjct: 779 AHAGARVLMKTS-KQGIPLRFGAIATLDGVQANSGIIDDDGSLYMAGLPAKG-TISVRWG 836

Query: 809 NQADQQCQFAFSTPDSEPTTSVLQGTAQC 837
              DQ C   +   + +  +++ +  A C
Sbjct: 837 EAPDQICHINYELTEQQINSAITRMDAIC 865