Pairwise Alignments

Query, 629 a.a., ATP-dependent RNA helicase DeaD from Escherichia coli HS(pFamp)R (ATCC 700891)

Subject, 557 a.a., RNA helicase from Pseudomonas simiae WCS417

 Score =  446 bits (1147), Expect = e-129
 Identities = 261/558 (46%), Positives = 352/558 (63%), Gaps = 20/558 (3%)

Query: 8   FADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQN 67
           FA   L   IL A+   GYE+PS IQ + IP ++ G+D++G AQTG+GKTAAF+LP+L  
Sbjct: 8   FAAFNLNPNILAAVAATGYEEPSAIQQQSIPIIMAGKDMIGQAQTGTGKTAAFALPILHC 67

Query: 68  LDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQ 127
           +DP  + PQ L+LAPTRELA+QVA A   ++K M GV VVA+YGG     QL+A+R G Q
Sbjct: 68  IDPAKREPQALILAPTRELALQVATAFETYAKQMPGVTVVAVYGGAPMGPQLKAIRNGAQ 127

Query: 128 IVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFS 187
           IVV TPGRL DHL+R    LS ++ LVLDEADEML++GF++D+E I   +P   QT LFS
Sbjct: 128 IVVATPGRLCDHLRRDEKVLSTVNHLVLDEADEMLKLGFMDDLEVIFKALPPTRQTVLFS 187

Query: 188 ATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDFDA 247
           AT+P++IR I  R +++P+ V+IQ+   T   I Q++  V   +K  A++  LE EDFDA
Sbjct: 188 ATLPQSIRAIAERHLRDPEHVKIQTKTQTVTAIEQAHLLVHADQKTSAVLSLLEVEDFDA 247

Query: 248 AIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAAR 307
            I+FVRTK ATL++A ALE  GY +AALNGD+ Q  RE+ ++ LKDGRLDI++ATDVAAR
Sbjct: 248 LIMFVRTKQATLDLASALEAKGYKAAALNGDIAQNQRERVIDSLKDGRLDIVVATDVAAR 307

Query: 308 GLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLT 367
           GLDV RI+ V N D+P D ESYVHRIGRTGRAGR GRALL V  RERR+L+ IER     
Sbjct: 308 GLDVPRITHVFNVDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRMLQVIERVTGQK 367

Query: 368 IPEVELPNAELLGKRRLEKFA---AKVQQQLESSDLDQYRALLSKIQPTAEGEELDLETL 424
           + EV LP+A+ +   R++K     + +    ES+  D    L + I  T          L
Sbjct: 368 VAEVRLPDAQAVLDARIKKLTNSLSPLVADAESTHGDLLDRLTADIGCTP-------RAL 420

Query: 425 AAALLKMAQGERTL---IVPPDAPMRPKREFR-DRDDRGPRDRNDRGPRGDREDRPRRER 480
           AAALL+ A   + L    +  + P+ P    R DR +R   DR DRG R  R   P  E 
Sbjct: 421 AAALLRKATNGQALTLAAIEKERPLVPNSAPRGDRPERS-GDRPDRGDRERRAPVPLAEG 479

Query: 481 RDVGDMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGMPGE 540
           R        R  +G  DG+  ++++GAI NEG ++   IG I++  S S +ELP+    +
Sbjct: 480 R-----ARCRTALGARDGIAAKNLLGAILNEGGLAREAIGRIQVRDSFSLVELPEDGLEK 534

Query: 541 VLQHFTRTRILNKPMNMQ 558
           +L     TR+  K + ++
Sbjct: 535 LLAKLKDTRVAGKQLKLR 552