Pairwise Alignments

Query, 325 a.a., Inner membrane protein YrbG from Escherichia coli HS(pFamp)R (ATCC 700891)

Subject, 348 a.a., conjugal transfer protein TraR from Pseudomonas simiae WCS417

 Score =  176 bits (445), Expect = 1e-48
 Identities = 117/337 (34%), Positives = 189/337 (56%), Gaps = 29/337 (8%)

Query: 8   LIVGLLLVVYSADRLVFAASILCRTFGIPPLIIGMTVVSIGTSLPEVIVSLAASLHEQRD 67
           ++ GL+L++  A+ LV AA  L  +  + PLIIG+T+V+ G+S P++ VSL A+L    D
Sbjct: 1   MVSGLVLLIIGAEILVRAAVRLAASLKVRPLIIGLTIVAFGSSAPQMTVSLQATLAGNTD 60

Query: 68  LAVGTALGSNIINILLILGLAALVRPFTVHSDVLRRELPLMLLVSVVAGSVLYDGQLSRS 127
           +AVG+ +GS+I NIL+ LGL+AL+ P  V   ++R ++P+M+L  ++  ++  +  L+  
Sbjct: 61  IAVGSVIGSSIFNILVTLGLSALIIPLRVSRQLVRLDIPVMILAGLLVFTLAANEALTPL 120

Query: 128 DGIFLLFLAVLWLLFIVKLARQAERQGTDSLTREQLAELPRDGGLPVAFLWLGIALIIMP 187
           DG+ LL   V +L  +    R + R  T       L  + R   L    L LG  L+I+ 
Sbjct: 121 DGLVLLVALVAYLGVLHYQTRHSRRPRT-------LDTVARAPWLSSVLLMLG-GLLILV 172

Query: 188 VATRMVVDNATVLANYFAISELTMGLTAIAIGTSLPELATAIAGVRKGENDIAVGNIIGA 247
           +A  +++  A  +A    +SE  +GLT I +GTSLP LAT++    +GE +IAVGN+IG+
Sbjct: 173 LAGHLLLGAAVDVAGDLGLSERVIGLTLIGVGTSLPCLATSLIAALRGEREIAVGNVIGS 232

Query: 248 NIFNIVIVLGLPALITPG--EIDPLAYSRDYSVMLLVSIIFALLCWRRSPQPGRGVGVLL 305
           N+FN++ VLGL AL+ P    + P A   D  VML V ++  L  +    +  R  G++L
Sbjct: 233 NLFNLLGVLGLTALLAPSPLSVSPNALDFDLPVMLGV-VVLCLPVFYTGYRVTRAEGLVL 291

Query: 306 TGGFIVW------------------LAMLYWLSPILV 324
            G ++ +                    MLY++ P+LV
Sbjct: 292 LGLYLAYGLHVMAFTTGMPLASKLEQLMLYYVLPVLV 328



 Score = 91.7 bits (226), Expect = 2e-23
 Identities = 54/146 (36%), Positives = 95/146 (65%), Gaps = 4/146 (2%)

Query: 3   LATALLIVGLLLVVYSADRLVFAASI-LCRTFGIPPLIIGMTVVSIGTSLPEVIVSLAAS 61
           L++ LL++G LL++  A  L+  A++ +    G+   +IG+T++ +GTSLP +  SL A+
Sbjct: 158 LSSVLLMLGGLLILVLAGHLLLGAAVDVAGDLGLSERVIGLTLIGVGTSLPCLATSLIAA 217

Query: 62  LHEQRDLAVGTALGSNIINILLILGLAALV--RPFTVHSDVLRRELPLMLLVSVVAGSVL 119
           L  +R++AVG  +GSN+ N+L +LGL AL+   P +V  + L  +LP+ML V V+   V 
Sbjct: 218 LRGEREIAVGNVIGSNLFNLLGVLGLTALLAPSPLSVSPNALDFDLPVMLGVVVLCLPVF 277

Query: 120 YDG-QLSRSDGIFLLFLAVLWLLFIV 144
           Y G +++R++G+ LL L + + L ++
Sbjct: 278 YTGYRVTRAEGLVLLGLYLAYGLHVM 303