Pairwise Alignments

Query, 1034 a.a., Multidrug export protein AcrF from Escherichia coli HS(pFamp)R (ATCC 700891)

Subject, 1037 a.a., aminoglycoside/multidrug efflux system (NCBI) from Escherichia coli BW25113

 Score = 1269 bits (3285), Expect = 0.0
 Identities = 647/1032 (62%), Positives = 797/1032 (77%), Gaps = 2/1032 (0%)

Query: 1    MANFFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDT 60
            MANFFI RPIFAWVLAI+L + G LAI  LPV QYP +APP V V+ANYPGA AQT+++T
Sbjct: 1    MANFFIDRPIFAWVLAILLCLTGTLAIFSLPVEQYPDLAPPNVRVTANYPGASAQTLENT 60

Query: 61   VTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATPLLPQ 120
            VTQVIEQNM G+DNLMYMSS S   G  ++TL+F++GTDPD A  QVQN+LQ A   LPQ
Sbjct: 61   VTQVIEQNMTGLDNLMYMSSQSSGTGQASVTLSFKAGTDPDEAVQQVQNQLQSAMRKLPQ 120

Query: 121  EVQQQGISVEKSSSSYLMVAGFVSDNPDTTQDDISDYVASNVKDTLSRLNGVGDVQLFGA 180
             VQ QG++V K+  + ++   FVS +    + DI+DYVASN++D LSR+NGVGD+  +G+
Sbjct: 121  AVQNQGVTVRKTGDTNILTIAFVSTDGSMDKQDIADYVASNIQDPLSRVNGVGDIDAYGS 180

Query: 181  QYAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQTRL 240
            QY+MRIWLD   LN +++T  DV + ++ QN QIA GQLGGTP++  Q LNA+I AQ+ L
Sbjct: 181  QYSMRIWLDPAKLNSFQMTAKDVTDAIESQNAQIAVGQLGGTPSVDKQALNATINAQSLL 240

Query: 241  KNPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANAL 300
            + PE+F  +TLRVN DGS VRL DVA VE+G E Y+ ++R NGKPA+GLG+KLA+GAN +
Sbjct: 241  QTPEQFRDITLRVNQDGSEVRLGDVATVEMGAEKYDYLSRFNGKPASGLGVKLASGANEM 300

Query: 301  DTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFLQ 360
             TA+ +  +L EL  +FP G++    Y+TT FV+ SI +VVKTL EAI LVFLVMYLFLQ
Sbjct: 301  ATAELVLNRLDELAQYFPHGLEYKVAYETTSFVKASIEDVVKTLLEAIALVFLVMYLFLQ 360

Query: 361  NMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVERVM 420
            N RATLIPTIAVPVVL+GTF++L AFGYS+NTLTMF MVLAIGLLVDDAIVVVENVER+M
Sbjct: 361  NFRATLIPTIAVPVVLMGTFSVLYAFGYSVNTLTMFAMVLAIGLLVDDAIVVVENVERIM 420

Query: 421  MEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMAL 480
             E+ L P+EAT KSM QIQGALVGIAMVLSAVF+PMAFFGG+TGAIYRQFSITIV+AM L
Sbjct: 421  SEEGLTPREATRKSMGQIQGALVGIAMVLSAVFVPMAFFGGTTGAIYRQFSITIVAAMVL 480

Query: 481  SVLVALILTPALCATLLKPVSAEHHENKGGFFGWFNTTFDHSVNHYTNSVGKILGSTGRY 540
            SVLVA+ILTPALCATLLKP+    H  + GFF WFN  F+ +   Y   V KIL  + R+
Sbjct: 481  SVLVAMILTPALCATLLKPLKKGEHHGQKGFFAWFNQMFNRNAERYEKGVAKILHRSLRW 540

Query: 541  LLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQKVLDQVTDYYLKN 600
            ++IY L++ GMV LFLRLP+SFLP ED+G+F T +QLP+G+TQ++T KV++Q+  YY  +
Sbjct: 541  IVIYVLLLGGMVFLFLRLPTSFLPLEDRGMFTTSVQLPSGSTQQQTLKVVEQIEKYYFTH 600

Query: 601  EKANVESVFTVNGFSFSGQAQNAGMAFVSLKPWEERNGDENSAEAVIHRAKMELGKIRDG 660
            EK N+ SVF   G    G  QN    F+ LK W ER+    ++ A+I RA     +I++ 
Sbjct: 601  EKDNIMSVFATVGSGPGGNGQNVARMFIRLKDWSERDSKTGTSFAIIERATKAFNQIKEA 660

Query: 661  FVIPFNMPAIVELGTATGFDFELIDQAGLGHDALTQARNQLLGMAAQHPASLVSVRPNGL 720
             VI  + PAI  LG++ GFD EL D AG GHDAL  ARNQLL +AA++P  L  VR NGL
Sbjct: 661  RVIASSPPAISGLGSSAGFDMELQDHAGAGHDALMAARNQLLALAAENP-ELTRVRHNGL 719

Query: 721  EDTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYVNDFIDRGRVKKVYVQADAKFRM 780
            +D+ Q ++++DQ KAQALGV++ DIN T+ TA G +YVNDF+DRGRVKKVYVQA A +RM
Sbjct: 720  DDSPQLQIDIDQRKAQALGVAIDDINDTLQTAWGSSYVNDFMDRGRVKKVYVQAAAPYRM 779

Query: 781  LPEDVDKLYVRSANGEMVPFSAFTTSHWVYGSPRLERYNGLPSMEIQGEAAPGTSSGDAM 840
            LP+D++  YVR+ +G MVPFSAF TS W  GSPRLERYNG  ++EI GEAAPG S+G AM
Sbjct: 780  LPDDINLWYVRNKDGGMVPFSAFATSRWETGSPRLERYNGYSAVEIVGEAAPGVSTGTAM 839

Query: 841  ALMENLASKLPAGIGYDWTGMSYQERLSGNQAPALVAISFVVVFLCLAALYESWSIPVSV 900
             +ME+L  +LP G G +WT MSYQERLSG QAPAL AIS +VVFLCLAALYESWS+P SV
Sbjct: 840  DIMESLVKQLPNGFGLEWTAMSYQERLSGAQAPALYAISLLVVFLCLAALYESWSVPFSV 899

Query: 901  MLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFAKDLMEKEGKGVV 960
            MLVVPLG++G LLA  +   +NDVYF VGLLT IGLSAKNAILIVEFA + M ++G  + 
Sbjct: 900  MLVVPLGVIGALLATWMRGLENDVYFQVGLLTVIGLSAKNAILIVEFANE-MNQKGHDLF 958

Query: 961  EATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGGMVSATLLAIFF 1020
            EATL A R RLRPILMTSLAFI GVLP+A S GAGSG Q+AVG GVMGGM+SAT+LAI+F
Sbjct: 959  EATLHACRQRLRPILMTSLAFIFGVLPMATSTGAGSGGQHAVGTGVMGGMISATILAIYF 1018

Query: 1021 VPVFFVVIRRCF 1032
            VP+FFV++RR F
Sbjct: 1019 VPLFFVLVRRRF 1030