Pairwise Alignments

Query, 586 a.a., 30S ribosomal protein S12 methylthiotransferase accessory factor YcaO from Escherichia coli ECRC99

Subject, 732 a.a., hypothetical protein from Pseudomonas simiae WCS417

 Score =  536 bits (1382), Expect = e-157
 Identities = 276/582 (47%), Positives = 370/582 (63%), Gaps = 8/582 (1%)

Query: 4   TFIPGKDAALEDSIARFQQKLSDLGFQIEEASWLNPVPNVWSVHIRDKECALCFTNGKGA 63
           T+I GKD  LE +IA     L+ LG +IE ASW N VPNVWS+HIRD    +CFTNGKGA
Sbjct: 150 TYIAGKDLPLEQTIANMSGILAGLGMKIEIASWRNIVPNVWSLHIRDAHSPMCFTNGKGA 209

Query: 64  TKKAALASALGEYFERLSTNYFFADFWLGETIANGPFVHYPNEKWFPLTENDDVPEGLLD 123
           TK+ ALASALGE+ ERL+ N+F+ D + GE +AN PFVHYP+E+WF    ND++P  +LD
Sbjct: 210 TKEGALASALGEFIERLNCNFFYNDQFWGEELANAPFVHYPDERWFQPGPNDELPSEILD 269

Query: 124 ERLRAFYDPENELTGSMLIDLQSGNEDRGICGLPFTRQSDNQTVYIPMNIIGNLYVSNGM 183
                 Y+ E EL GS L D  SGNE+RGI  LPF RQSD + VY P N+I NLY+SNGM
Sbjct: 270 AYCLKVYNREGELRGSHLFDTNSGNEERGIVSLPFVRQSDGEVVYFPSNLIENLYLSNGM 329

Query: 184 SAGNTRNEARVQGLSEVFERYVKNRIIAESISLPEIPADVLARYPAVVEAIETLEAEGFP 243
           SAGNT  EA+VQ LSE+FER VK  II    +LP++P +VLA+YP ++  I+ LEA+GFP
Sbjct: 330 SAGNTLAEAQVQCLSEIFERAVKREIIEGEFALPDVPTEVLAKYPGILAGIQGLEAQGFP 389

Query: 244 IFAYDGSLGGQYPVICVVLFNPANGTCFASFGAHPDFGVALERTVTELLQGRGLKDLDVF 303
           +   D SLGG++PV+CV L NP  G  FASFGAHP   VALER++TELLQGR  + L+  
Sbjct: 390 VLVKDASLGGEFPVMCVTLMNPRTGGVFASFGAHPSLEVALERSLTELLQGRSFEGLNDL 449

Query: 304 TPPTFDDEEVAEHTNLETHFIDSSGLISWDLFKQDADYPFVDWNFSGTTE----EEFATL 359
             PTF+ + V E  N   HFIDSSG++SW  F   +DY FV+W+F+G  E    +E ATL
Sbjct: 450 PQPTFEGQAVTEPNNFVEHFIDSSGVVSWRFFSAQSDYEFVEWDFTGAGEDSNAQEAATL 509

Query: 360 MAIFNKEDKEVYIADYEHLGVYACRIIVPGMSDIYPAEDLWLANNSMGSHLRETILSLPG 419
             I     KE Y+A YEHLG  ACRI+VP  S+IYP +DL   N +     RE IL+L  
Sbjct: 510 FGILEGMGKESYMAVYEHLGATACRILVPDYSEIYPVDDLIWDNTNKALFFREDILNL-- 567

Query: 420 SEWEKEDYLNLIEQLDEEGFDDFTRVRELLGLATGSDNGWYTLRIGELKAMLALAGGDLE 479
               +E+   L+E+L E   DD+T +  L+G+    +  W  L I ELK ++ LA    E
Sbjct: 568 HRLNEEELQALVERLIESELDDYTDITTLIGIEFDDNTAWGQLTILELKLLIFLALQQYE 627

Query: 480 QALVWTEWTMEFNSSVFSPERANYYRCLQTLLLLAQEEDRQPLQYLNAFVRMYGADAVEA 539
           +A    E  +++N +  + ER  +Y+ +  +L +  ++D +   Y   F RM+G + ++A
Sbjct: 628 EAKECVEMFLQYNDN--TAERGLFYQAMNAVLEMELDDDLELADYEANFRRMFGNERMDA 685

Query: 540 ASAAMSGEAAFYGLQPVDSDLHAFAAHQSLLKAYEKLQRAKA 581
              ++ G+  FYGL P    L     HQ L+++Y+KL  A+A
Sbjct: 686 VIGSVQGDVRFYGLTPTSMKLEGLDRHQRLIESYKKLHSARA 727