Pairwise Alignments

Query, 586 a.a., 30S ribosomal protein S12 methylthiotransferase accessory factor YcaO from Escherichia coli ECRC99

Subject, 728 a.a., cofactor of beta-methylthiolation of ribosomal protein S12 from Pseudomonas putida KT2440

 Score =  530 bits (1366), Expect = e-155
 Identities = 275/586 (46%), Positives = 369/586 (62%), Gaps = 8/586 (1%)

Query: 2   TQTFIPGKDAALEDSIARFQQKLSDLGFQIEEASWLNPVPNVWSVHIRDKECALCFTNGK 61
           T T+IPGKD  LE +IA     L+ LG +IE ASW N VPNVWS+H+RD +  +CFTNGK
Sbjct: 146 TSTYIPGKDLPLEQTIANMSGILAGLGMKIEIASWRNIVPNVWSLHVRDAQSPMCFTNGK 205

Query: 62  GATKKAALASALGEYFERLSTNYFFADFWLGETIANGPFVHYPNEKWFPLTENDDVPEGL 121
           GATK+AALASALGE+ ERL+ N+F+ D + GE +AN PFVHYPNE+WF     D +P  +
Sbjct: 206 GATKEAALASALGEFIERLNCNFFYNDQFWGEDLANAPFVHYPNEQWFKPGPRDALPAEI 265

Query: 122 LDERLRAFYDPENELTGSMLIDLQSGNEDRGICGLPFTRQSDNQTVYIPMNIIGNLYVSN 181
           LDE   A Y+P+ EL GS L D  SGN  RGIC LPF RQSD Q VY P N+I NL++SN
Sbjct: 266 LDEHCLAIYNPDGELRGSHLYDTNSGNTARGICSLPFVRQSDQQVVYFPSNLIENLFLSN 325

Query: 182 GMSAGNTRNEARVQGLSEVFERYVKNRIIAESISLPEIPADVLARYPAVVEAIETLEAEG 241
           GMSAGNT  EA+VQ LSE+FER VK  I+   + LP++P +VLA+YPA++  I+ LE +G
Sbjct: 326 GMSAGNTLAEAQVQCLSEIFERAVKREILEGELCLPDVPQEVLAKYPAILAGIQGLEEQG 385

Query: 242 FPIFAYDGSLGGQYPVICVVLFNPANGTCFASFGAHPDFGVALERTVTELLQGRGLKDLD 301
           FP+   D SLGG++PV+CV L NP  G  FASFGAHP   VALER++TELLQGR  + L+
Sbjct: 386 FPVLVKDASLGGEFPVMCVTLMNPRTGGVFASFGAHPSLEVALERSLTELLQGRSFEGLN 445

Query: 302 VFTPPTFDDEEVAEHTNLETHFIDSSGLISWDLFKQDADYPFVDWNFSG----TTEEEFA 357
               PTF+   + E  N   HFIDSSG++SW  F   AD+ FV+W+FSG    + ++E A
Sbjct: 446 DLPQPTFESHALTEPNNFVEHFIDSSGVVSWRFFSAKADFEFVEWDFSGHGEDSNQQEAA 505

Query: 358 TLMAIFNKEDKEVYIADYEHLGVYACRIIVPGMSDIYPAEDLWLANNSMGSHLRETILSL 417
           TL  I     KEVY+A Y++LG  ACRI+VPG S+IYP EDL   N +     R  IL+L
Sbjct: 506 TLFGILEDLGKEVYMAVYDNLGATACRILVPGYSEIYPVEDLIWDNTNRALSFRADILNL 565

Query: 418 PGSEWEKEDYLNLIEQLDEEGFDDFTRVRELLGLATGSDNGWYTLRIGELKAMLALAGGD 477
                +      L+++LD    DD+T +  L+G+    +  W  L I ELK ++ LA   
Sbjct: 566 --HSLDSRSLKLLLKRLDNCDVDDYTTITTLIGVEFDENTVWGQLTILELKLLICLAVQR 623

Query: 478 LEQALVWTEWTMEFNSSVFSPERANYYRCLQTLLLLAQEEDRQPLQYLNAFVRMYGADAV 537
            E A    E  ++FN +  + +R  +Y+ L  +L +  +++ +   Y   F RM+G   +
Sbjct: 624 FEDAKELVEAFLQFNDN--TVDRGLFYQALNVVLEVQLDDELEMDDYEANFRRMFGNARM 681

Query: 538 EAASAAMSGEAAFYGLQPVDSDLHAFAAHQSLLKAYEKLQRAKAAF 583
           +A   ++ G   F+GL P    L     H  L+ +Y+KL  A+A F
Sbjct: 682 DAVLGSVDGSVRFHGLTPTSMKLEGLDRHLRLIDSYKKLHAARAKF 727