Pairwise Alignments

Query, 1144 a.a., type VI secretion system membrane subunit TssM from Escherichia coli ECRC99

Subject, 831 a.a., OmpA domain protein from Pseudomonas putida KT2440

 Score =  134 bits (338), Expect = 2e-35
 Identities = 129/475 (27%), Positives = 207/475 (43%), Gaps = 72/475 (15%)

Query: 95  RHLDNRRFLWQLPWYMVIGPAGSGKTTLLREGFPSDIIYAPEGAR-----GTEQHLYLTP 149
           R   N+  L+ LPWY+VIG   +GK+T++ +   +      EG R     GT    +   
Sbjct: 113 RGTSNKDALYALPWYLVIGQPAAGKSTMILQSGLNFPYAEREGVRVAGLGGTRNCDWF-- 170

Query: 150 HVGKQAVIFDIDGT-LCAPADADILHRRLWEHALGWLKEKRARQPLNGIILTLDLPDLLT 208
               +AV+ D  G  + +P +A       W   L  L++ R R+PLNG+I+++ + D+L 
Sbjct: 171 -FSSEAVLLDTAGRYMNSPEEAG-----KWRGFLQLLRQHRQRRPLNGLIVSVSIADILH 224

Query: 209 ADKRHREHLLQTLRSRLQDIRQHLHCQLPVYVVLTRLDLLQGFAALFQSLNRQDRDAILG 268
                +E + + LR R+Q+    L  +LP+Y+V T+ DL+ GF A ++ L+   R  ++G
Sbjct: 225 GSVEDQERVAKRLRERIQESCALLEVRLPIYLVFTKCDLIPGFTAFYRQLDDAARGEVMG 284

Query: 269 VTFTRRAHENDDW-------RTELNAFWQTWVDRMNLALPDLMVTQTHTRASLFSFSRQM 321
            TF+ + +E  DW         EL  +W     +  L   D+ VT+ +  A  + F  ++
Sbjct: 285 KTFSHKGYEQADWGQRFSNAMDELTRYWGQMASQ-QLVQQDIQVTRRNDAA--YRFPLEL 341

Query: 322 QGSREPLVSLLEGLLDGENMN--VMLRGVYLTSSLQRGQMD-DIFTQSAARQYRL----G 374
              +  L   ++ LL         MLRG Y T++LQ  +       Q  A ++ L    G
Sbjct: 342 AALKPRLHQFVDSLLRANPYQNAEMLRGFYFTAALQADEAQWGCHGQHVAERFALEHAEG 401

Query: 375 NNPLASWPLVDTAPYFTRSLFPQALLAEPNLATESRAWLMRSRRRLTVFSATGGVAALLL 434
                S P    AP F  SLF + ++ + +L     +   R RRR   +    G+AAL+L
Sbjct: 402 TGTAGSQP----APLFINSLFRKVIIPDQHLVALYTS-NHRERRRKAGWVGAAGLAALVL 456

Query: 435 ITGWHHYYNGNYQSGITV---LKQAKAFMDVPPPQGEDDYGNLQLPLLNPVRDATLAYGD 491
            + W   Y  N  +  ++   L QAKA          DD            + A+  Y  
Sbjct: 457 CSLWGWSYLNNRATLASIADELAQAKA----------DD------------QAASGQYTA 494

Query: 492 WGDRSRLA-----------DMGLYQGRRIGPYVEQTYLQLLEQRYLPSLFNGLVK 535
           W    RL              G+  G R+G Y       LL  RY  +L N ++K
Sbjct: 495 WRSLDRLRFWAAHYHEQHHAKGVPLGMRLGLYQGHEVEPLLRDRYFATLQNVMLK 549