Pairwise Alignments

Query, 385 a.a., DNA-binding transcriptional regulator CdaR from Escherichia coli ECRC99

Subject, 368 a.a., CdaR family transcriptional regulator from Pseudomonas simiae WCS417

 Score =  231 bits (590), Expect = 2e-65
 Identities = 148/379 (39%), Positives = 214/379 (56%), Gaps = 20/379 (5%)

Query: 4   WHLDTKMAQDIVARTMRIIDTNINVMDARGRIIGSGDRERIGELHEGALLVLSQGRVVDI 63
           + LD  +AQDIV RTM I+  N+NVMD++G I+GSG+ ERI   HEGA LVL+ GRVV+I
Sbjct: 2   FELDHDLAQDIVDRTMAILPYNVNVMDSQGLILGSGEPERINTRHEGAQLVLANGRVVEI 61

Query: 64  DDAVARHLHGVRQGINLPLRLEGEIVGVIGLTGEPENLRKYGELVCMTAEMMLEQSRLMH 123
           D   A+HL GV+ GINLPL  +G ++GV+G+TGEPE LR Y ELV MTAEM++   R   
Sbjct: 62  DGQTAKHLKGVQPGINLPLLHDGRLIGVLGITGEPEGLRTYAELVRMTAEMLVSH-RHQQ 120

Query: 124 LLAQDSRLREELVMNLIQAEE-NTPALTEWAQRLGIDLNQPRVVAIVEVDSGQLGVDSAM 182
              Q  R R + ++ L+ AE  ++P L + AQ+LG+    PR   + E+ +GQ       
Sbjct: 121 AEQQWRRQRCDDLLALLLAETGDSPRLVDEAQQLGLKPQLPRTPYLFELGAGQ------- 173

Query: 183 AELQQLQNALTTPERNNLVAIVSLTEMVVLKPALNSFGRWDVEDHRKRVEQLITRMKEYG 242
              + L   LT+   ++     +   ++  +PA        V++ R     L+ ++   G
Sbjct: 174 -SAEALSTWLTSRYPDSWCVSSAQFSLLWCRPA-----AVQVDNPR-----LLEKLDALG 222

Query: 243 QLRFRVSLGNYFTGPGSIARSYRTAKTTMVVGKQRMPESRCYFYQDLMLPVLLDSLRGDW 302
               RV++G    G   + R YR     +  G+  +P+SR        LPV+L   R D 
Sbjct: 223 WNVLRVAVGGQADGLAGLRRCYRRVGDLLAYGRDVLPQSRLLTLNRYRLPVMLWRHRNDD 282

Query: 303 QANELARPLARLKAMDNNGLLRRTLAAWFRHNVQPLATSKALFIHRNTLEYRLNRISELT 362
             +EL  PL ++ A D+NG L  TL +W  H+ Q  A + AL IHRN+L YR+ RI+EL+
Sbjct: 283 ALDELLNPLRKVLAKDSNGQLLATLRSWCEHDGQSQACADALGIHRNSLRYRMERIAELS 342

Query: 363 GLDLGNFDDRLLLYVALQL 381
           G+D    D  L LY+ +QL
Sbjct: 343 GVDPLTLDGMLALYLGVQL 361