Pairwise Alignments

Query, 356 a.a., fimbrial protein from Escherichia coli ECRC99

Subject, 359 a.a., Putative fimbriae from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score =  106 bits (264), Expect = 1e-27
 Identities = 102/357 (28%), Positives = 158/357 (44%), Gaps = 40/357 (11%)

Query: 17  GFAANGDG---ATHMSNLSFGPL--TVAAANNHSGYNIFEALSNTTGTYPVRCHCDDT-H 70
           G   NG G    T  ++  F PL  T+   + +    I +   +  G Y  RC CD+  +
Sbjct: 21  GTMGNGSGWCQPTSGTHNFFFPLDQTITDTDENQAGKIVKESWSVGGEYSARCDCDNKDY 80

Query: 71  GGPGQQTAFFPIFYTGDAAP-GLVLERTLNG--LNYYAL-NDYLSVGVTIFIINN--QYA 124
            G    TA      TGD    G   E   NG  +++Y L    L +G   +I+ N  QY 
Sbjct: 81  QGVNYFTAT-----TGDLTQKGTYSEAGSNGQQMDFYVLVAGKLEIGTETYIVGNLKQYI 135

Query: 125 AIPFEHLSNQSTSPQHTCGAGNNGSTVNLDSGRSAKLSFYVRHSITGTVTIPTTEVAWLY 184
            +PF  +SNQ  +     GA  N     + +G    +  Y+ H + G +TIP T +  LY
Sbjct: 136 PVPFSAISNQDPTAGGCTGADIN----KMSAGNKGNVRIYITHPLVGEITIPETTIMNLY 191

Query: 185 AGMS-----DHFPKTTP-VSKVTIRGQLTAPQNCELTPNQSIDVDFQKINSAEFSSTAGS 238
              +     D+ P + P ++ VT+ G +T PQ+C +   Q I+V    I   +     G 
Sbjct: 192 LSKTPGSSGDNIPPSVPPMAHVTMSGTITVPQSCSINAGQVIEVRLPDIEGKDIRH-LGD 250

Query: 239 IIAERKIKTEVTVSCTGMEDVRSTEVVSASMIAANRSADATMIVTSNPDVGIKIFDKNDR 298
                 + T+V  +C+ + D  +   +S S+  A    +   + T N ++GI+I DK D 
Sbjct: 251 SPQNSHVTTQVNFTCSNVADGTN---LSMSLNGATDPHNPDYLKTDNENLGIRISDKYDN 307

Query: 299 PVNVDGGN--LPADMGAISRLGKTDGSVTFYSAPASLTGAKPAPDNGFTATATLVIE 353
            + V GG+  LP +     R     GS  F +AP + TG  P     + ATATL I+
Sbjct: 308 TI-VPGGSAELPIEDYTDGR-----GSTEFTAAPVNTTGHVPHTGE-YQATATLEIQ 357