Pairwise Alignments

Query, 477 a.a., RNA polymerase factor sigma-54 from Escherichia coli ECRC99

Subject, 483 a.a., RNA polymerase sigma-54 factor from Echinicola vietnamensis KMM 6221, DSM 17526

 Score =  278 bits (710), Expect = 4e-79
 Identities = 170/488 (34%), Positives = 281/488 (57%), Gaps = 24/488 (4%)

Query: 6   QLRLSQQLA--MTPQLQQAIRLLQLSTLELQQELQQALESNPLLEQIDTHEEIDTRETQD 63
           +L L+Q L+  ++PQ  Q I+LLQ+ T EL+  +++ LE NP LE+    E  D +E   
Sbjct: 3   KLNLNQVLSQKLSPQQIQFIKLLQVPTAELEARVEEELEINPALEE-GKEEGDDAQEEVL 61

Query: 64  SETLDTADALEQKEMPEELPLDASWDTIYTAGTPSGTSGDYIDDELPVYQGETTQTLQDY 123
           ++  D  +  E K++  E  L   +      G  + T  D  D E+P+  G +   L + 
Sbjct: 62  ADNYDEGNK-EDKDINLEDYLSDDYGGYKMQGDGNYTP-DEEDREMPLSSGTS---LHEQ 116

Query: 124 LMWQVELTPFSDTDRAIATSIVDAVDDTGYLTVPLEDILESMG---DEEIDIDEVEAVLK 180
           L+ Q+      +  + I   ++ +++  GY+   LE I+  +    + E D+DEVE VL+
Sbjct: 117 LLSQLSFLRLDEHQKLIGKQLIGSIESDGYIRRDLEAIINDLAFSQNVETDLDEVEEVLR 176

Query: 181 RIQRFDPVGVAAKDLRDCLLIQLSQFD-KTTPWLEEARLIISDHLDLLANHDFRTLMRVT 239
           +IQ FDP G+AA+ L++CL+IQL + + +    +++A  +++D  D      +  +++  
Sbjct: 177 KIQNFDPAGIAARSLQECLIIQLERKEHQEDEVVQKAIKVVTDCFDEFTKKHYDKILKKC 236

Query: 240 RLKEDVLKEAVNLIQSLDPRPGQ-SIQTGEPEYVIPDVLVRKHNGHWTVELNSDSIPRLQ 298
            L E+ LKE + +I  L+P+PG  S      +Y+IPD L+   NG   + LNS + P L+
Sbjct: 237 NLSEEDLKEVIQMITRLNPKPGGGSDGLMRTQYIIPDFLLNVVNGKPEITLNSRNAPELR 296

Query: 299 INQHYASMCNNARNDGDSQ---------FIRSNLQDAKWLIKSLESRNDTLLRVSRCIVE 349
           +++ Y+ M   A    D +         F++  L  AKW I +++ R  TLL+    I++
Sbjct: 297 VSRSYSEMFE-AYEKSDKKDKKLKDTVSFVKQKLDAAKWFIDAIKQRQQTLLKTMHAILD 355

Query: 350 QQQAFFEQGEEY-MKPMVLADIAQAVEMHESTISRVTTQKYLHSPRGIFELKYFFSSHVN 408
            Q+ FFE+G+E  +KPM+L DIA+ ++M  ST+SRV   K + +  G+F LKYFFS  ++
Sbjct: 356 YQKEFFEEGDETKLKPMILKDIAERIDMDISTVSRVANSKAIQTEFGVFPLKYFFSEGIS 415

Query: 409 TEGGGEASSTAIRALVKKLIAAENPAKPLSDSKLTSLLSEQGIMVARRTVAKYRESLSIP 468
           TEGG + S+  ++++++KL+  E+  KPLSD KL  LL+E+G  +ARRTVAKYRE L IP
Sbjct: 416 TEGGEDVSNREVKSVLQKLVDNEDKRKPLSDDKLVKLLNEKGYNIARRTVAKYREQLQIP 475

Query: 469 PSNQRKQL 476
            +  RK+L
Sbjct: 476 VARLRKEL 483