Pairwise Alignments

Query, 349 a.a., tRNA pseudouridine(13) synthase TruD from Escherichia coli ECRC99

Subject, 352 a.a., pseudouridine synthase from Pseudomonas simiae WCS417

 Score =  200 bits (509), Expect = 4e-56
 Identities = 126/330 (38%), Positives = 177/330 (53%), Gaps = 3/330 (0%)

Query: 11  HGKPQGTGLLKANPEDFVVVEDLGFEPDGEGEHILVRILKNGCNTRFVADALAKFLKIHA 70
           +G+  G  +LKA  EDF V E L     GEGEH+ + + K G NT   A  +AK   +  
Sbjct: 12  YGEALGRAVLKATAEDFQVDEVLDIPLTGEGEHLWLWVEKRGLNTEEAARRIAKAAGVPL 71

Query: 71  REVSFAGQKDKHAVTEQWLCARVPGKEMPDLSAFQLEGCQVLEYARHKRKLRLGALKGNA 130
           R VS+AG KD+ A+T QW   ++PGK  PD+SA + +  ++L+ ARHKRKL+ GA   N 
Sbjct: 72  RTVSYAGLKDRQALTRQWFSVQLPGKADPDMSAAENDTLKILKTARHKRKLQRGAHSANG 131

Query: 131 FTLVLREVS-NRDDVEQRLIDICVKGVPNYFGAQRFGIGGSNLQGALRWAQTNTPVRDRN 189
           FTL L +++ +   ++ RL  I   G+PNYFGAQRFG  G N+  A  WA        RN
Sbjct: 132 FTLRLTQLAGDTAAIDARLQLIAQHGIPNYFGAQRFGHNGGNVVDAREWAARRALPEQRN 191

Query: 190 KRSFWLSAARSALFNQIVAERLKKADVNQVVDGDALQLAGRGSWFVATTEELVELQRRVN 249
            RS  LS ARS LFN+++A R+      +   GD L      S+F A   E  + +  + 
Sbjct: 192 VRSRLLSTARSFLFNKVLASRVADGSWQRAQVGDLLAFTDSRSFFPAGEAECSDPRLAIL 251

Query: 250 DKELMITAALPGSGEWGTQREALAFEQAAVAAETELQALLVREKVEAARRAMLLYPQQLS 309
           D  L  T    G G+          EQA  A E +L+  LV   +   RR + L    L+
Sbjct: 252 D--LHPTGPQWGEGDSPASGATFELEQAVAAGEADLRDWLVNAGMSQERRILRLPIGGLT 309

Query: 310 WNWWDDVTVEIRFWLPAGSFATSVVRELIN 339
           W++     +++ F LPAG FAT +VREL++
Sbjct: 310 WHYPSLDILQLEFVLPAGCFATVLVRELVD 339