Pairwise Alignments

Query, 261 a.a., flagellar type III secretion system protein FliR from Escherichia coli ECRC99

Subject, 261 a.a., flagellar biosynthesis protein FliR from Pseudomonas simiae WCS417

 Score =  169 bits (427), Expect = 7e-47
 Identities = 96/255 (37%), Positives = 144/255 (56%), Gaps = 2/255 (0%)

Query: 1   MLQVTSEQWLSWLSLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPA 60
           +L +T  Q  +W++ +  P+ RV A++   P+     VP+RV+L  A+ IT  I P LP 
Sbjct: 4   LLALTDTQISTWVASFILPMFRVTAMLMAMPVFGTTLVPRRVRLYFAVAITVVIVPGLPP 63

Query: 61  ND-VPVFSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASH 119
              V      AL L  +QILIG  +GF++   F A   AG+II +QMG+ FA+ VDP + 
Sbjct: 64  MPPVNAIDLSALLLIAEQILIGALMGFSLTLFFQAFVVAGQIISIQMGMGFASMVDPTNG 123

Query: 120 LNMPVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLI 179
           ++  V+ + + ML  LLFL  NGHL    ++ ++F TLP+ G  L  N F  +      +
Sbjct: 124 VSAAVIGQFLTMLVTLLFLAMNGHLVAFEVMTESFTTLPV-GSGLVVNHFWEVVGRLGWV 182

Query: 180 FLNGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPF 239
           F   L+L LP IT LL +N+A G++ R APQL+IF IGFPLTL +G+ +    +  I   
Sbjct: 183 FGASLLLVLPAITALLVVNIAFGVMTRAAPQLNIFSIGFPLTLVLGMGIFWVGLADILNQ 242

Query: 240 CEHLFSEIFNLLADI 254
            + L ++    L D+
Sbjct: 243 YQPLATDALQFLRDL 257