Pairwise Alignments

Query, 261 a.a., flagellar type III secretion system protein FliR from Escherichia coli ECRC99

Subject, 258 a.a., Flagellar biosynthetic protein fliR from Pseudomonas putida KT2440

 Score =  178 bits (451), Expect = 1e-49
 Identities = 99/257 (38%), Positives = 154/257 (59%), Gaps = 6/257 (2%)

Query: 1   MLQVTSEQWLSWLSLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPA 60
           ML++T  Q  +W++ +  PL RV A++ T PI   R +P R++L +A+ +T  I P+LP 
Sbjct: 1   MLELTDTQIGTWVATFILPLFRVTAVLMTMPIFGTRMLPARIRLYVAVAVTVVIVPALPP 60

Query: 61  NDVPVF---SFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPA 117
             +P F   S   + L  +QI++G   G  +Q  F A   AG+I+ +QMG++FA+ VDPA
Sbjct: 61  --LPEFDPLSLRGMLLCAEQIIVGALFGLALQLLFQAFVVAGQIVAVQMGMAFASMVDPA 118

Query: 118 SHLNMPVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGS 177
           + +N+ V+++ M ML  +LFL  NGHL +  +L ++F TLP+ G  L  N F  L     
Sbjct: 119 NGVNVTVISQFMTMLVSVLFLLMNGHLVVFEVLTESFTTLPV-GSALVVNHFWELAGRMG 177

Query: 178 LIFLNGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIA 237
            +F  GL+L LP+I  LL +N+A G++ R APQL+IF IGFPLTL +G+ +    +  + 
Sbjct: 178 WVFGAGLLLILPVIAALLVVNIAFGVMTRAAPQLNIFSIGFPLTLVMGMFIFWVGLADVL 237

Query: 238 PFCEHLFSEIFNLLADI 254
              + L SE    L ++
Sbjct: 238 SHYQALASETLQWLREL 254