Pairwise Alignments

Query, 261 a.a., flagellar type III secretion system protein FliR from Escherichia coli ECRC99

Subject, 259 a.a., Type III secretion inner membrane protein (YscT,HrcT,SpaR,EscT,EpaR1,homologous to flagellar export components) from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score = 76.3 bits (186), Expect = 6e-19
 Identities = 62/241 (25%), Positives = 112/241 (46%), Gaps = 14/241 (5%)

Query: 8   QWLSWLSLYFWPLLRVLALISTAPILSERSVPKRV-KLGLAMMITFAIAPSLPANDVPVF 66
           +WL  L++ F   +R L+L    P+L   S+   + + G+ M +TF I P +    + + 
Sbjct: 7   EWLIALAVAF---IRPLSLSLLLPLLKSGSLGAALLRNGVLMSLTFPILPIIYQQKIMMH 63

Query: 67  ---SFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMP 123
               +  L L   +++IG ++GF     F AV  AG ++    G +  T  +        
Sbjct: 64  IGKDYSWLGLVTGEVIIGFSIGFCAAVPFWAVDMAGFLLDTLRGATMGTIFNSTIEAETS 123

Query: 124 VLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKA-GSLIFLN 182
           +   +      ++F    G  +++++L +++  LP G   L    FL   +A    ++  
Sbjct: 124 LFGLLFSQFLCVIFFISGGMEFILNILYESYQYLPPGRTLLFDQQFLKYIQAEWRTLYQL 183

Query: 183 GLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIA-PFCE 241
            +  +LP I  ++  +LALGLLNR A QL++F    PL      S++  L  LI+ P+  
Sbjct: 184 CISFSLPAIICMVLADLALGLLNRSAQQLNVFFFSMPLK-----SILVLLTLLISFPYAL 238

Query: 242 H 242
           H
Sbjct: 239 H 239