Pairwise Alignments

Query, 308 a.a., flagellar motor protein MotB from Escherichia coli ECRC99

Subject, 340 a.a., flagellar motor protein MotB from Pseudomonas sp. SVBP6

 Score =  222 bits (566), Expect = 8e-63
 Identities = 124/310 (40%), Positives = 188/310 (60%), Gaps = 14/310 (4%)

Query: 9   IVVKRRKAKSHGAAHGSWKIAYADFMTAMMAFFLVMWLISISSPKELIQIAEYFRTPLAT 68
           I+VKR K    G   G+WKIA+ADF TAMMAFFLV+WL+S ++P++ I IA YF+ P+  
Sbjct: 7   IIVKRIKRFGDGHHGGAWKIAFADFATAMMAFFLVLWLLSTATPEQKIAIAGYFKDPIGF 66

Query: 69  AVTG---------GDRISNSESPIPGGGDDYTQSQGEVNKQPNIEELKKRMEQSRLRKLR 119
           + +G           +++  ++  P    + T        Q  +E + +++E+ RL  L 
Sbjct: 67  SESGTPYIIDLGGSPQLAPEKTINPEVKSEPTPDTSLQLDQDKVESMAEQVERERLELLL 126

Query: 120 GDLDQLIESDPKLRVLRPHLKIDLVQEGLRIQIIDSQNRPMFRTGSADVEPYMRDILRAI 179
            +L   +E +P+L+  +  +  ++ Q+GLRIQI+D++NRPMF  GSA ++PY  DIL A+
Sbjct: 127 QELQNKVEENPQLQKFKDQILFEITQDGLRIQIMDAENRPMFDLGSARLQPYFEDILLAM 186

Query: 180 APVLNGIPNRISLSGHTDDFPYASGEKGYSNWELSADRANASRRELMVGGLDSGKVLRVV 239
           A  +  +PN+IS+SGHTD  PYA G   + NWELSA+RANA+RR L+ GG    +V RVV
Sbjct: 187 ADTIKAVPNKISISGHTDAKPYA-GTGDFGNWELSANRANAARRALVAGGYPDTQVARVV 245

Query: 240 GMAATMRLSDRGPDDAVNRRISLLVLNKQAEQAILHENAESQNEPVSALEKPEVAPQVSV 299
           G A++     + P + VNRRI ++VL K+A++ I  E  ++Q     A +    AP  + 
Sbjct: 246 GYASSSLFDRQNPLNPVNRRIDIIVLTKKAQRTI--EGEQTQPAAPDAAQPGAAAPVPAA 303

Query: 300 P--TMPSAEP 307
           P    P+AEP
Sbjct: 304 PQAQAPAAEP 313