Pairwise Alignments

Query, 466 a.a., GABA permease from Escherichia coli ECRC98

Subject, 463 a.a., gamma-aminobutyrate transporter from Pseudomonas simiae WCS417

 Score =  603 bits (1555), Expect = e-177
 Identities = 304/442 (68%), Positives = 361/442 (81%)

Query: 1   MGQSSQPHELGGGLKSRHVTMLSIAGVIGASLFVGSSVAIAEAGPAVLLAYLFAGLLVVM 60
           M  +   ++L  GLK RHVTMLSIAGVIGA LFVGS  AIA AGPAVLLAY  AG LVV+
Sbjct: 1   MSSTQSSNDLEQGLKPRHVTMLSIAGVIGAGLFVGSGHAIAAAGPAVLLAYAAAGTLVVL 60

Query: 61  IMRMLAEMAVATPDTGSFSTYADKAIGRWAGYTIGWLYWWFWVLVIPLEANIAAMILHSW 120
           +MRMLAEMAVA+PDTGSFSTYAD+AIG WAG+TIGWLYWWFWVLVIPLEAN AA ILH+W
Sbjct: 61  VMRMLAEMAVASPDTGSFSTYADRAIGHWAGFTIGWLYWWFWVLVIPLEANAAATILHAW 120

Query: 121 VPGIPIWLFSLVITLALTGSNLLSVKNYGEFEFWLALCKVIAILAFIFLGAVAISGFYPY 180
            P I IW+F+LVITL LT +NL SVKNYGEFEFW AL KV+AI+ F+ LG  AI GF P 
Sbjct: 121 FPDIAIWVFTLVITLLLTATNLFSVKNYGEFEFWFALIKVVAIVGFVILGLAAIFGFLPT 180

Query: 181 ADVSGISRLWDSGGFMPNGFGAVLSAMLITMFSFMGAEIVTIAAAESDTPEKHIVRATNS 240
           + VSG+S L+D+ GFMPNG GAVL+A+L TMFSFMG EIVTIAAAES  P + I +ATNS
Sbjct: 181 SQVSGVSHLFDTQGFMPNGMGAVLAAILTTMFSFMGTEIVTIAAAESKNPGQQITKATNS 240

Query: 241 VIWRISIFYLCSIFVVVALIPWNMPGLKAVGSYRSVLELLNIPHAKLIMDCVILLSVTSC 300
           VIWRI +FYL SIF+VV+L+PWN P L AVGSY++VLE + IP+AKLI+D V+L++VTSC
Sbjct: 241 VIWRIGLFYLLSIFIVVSLVPWNDPTLAAVGSYQTVLERMGIPNAKLIVDLVVLVAVTSC 300

Query: 301 LNSALYTASRMLYSLSRRGDAPAVMGKINRSKTPYVAVLLSTGAAFLTVVVNYYAPAKVF 360
           LNSALYTASRML+SL RRGDAPAV  + N+S TPY AVLLSTGAAFL V  NY APA VF
Sbjct: 301 LNSALYTASRMLFSLGRRGDAPAVAKRTNKSGTPYWAVLLSTGAAFLAVFANYVAPAAVF 360

Query: 361 KFLIDSSGAIALLVYLVIAVSQLRMRKILRAEGSEIRLRMWLYPWLTWLVIGFITFVLVV 420
           +FL+ SSGAIALLVYLVIAVSQLRMR+   A G +I  +MWL+P LT+ V+ FI   L +
Sbjct: 361 EFLLASSGAIALLVYLVIAVSQLRMRQKRTAAGEKIVFKMWLFPGLTYAVMVFIVGTLTI 420

Query: 421 MLFRPAQQLEVISTGLLAIGII 442
           MLF+ A ++E+I+TG+L++ ++
Sbjct: 421 MLFQEAHRIEIIATGVLSLLVV 442