Pairwise Alignments

Query, 330 a.a., RNA polymerase sigma factor RpoS from Escherichia coli ECRC98

Subject, 334 a.a., RNA polymerase sigma factor from Pseudomonas simiae WCS417

 Score =  413 bits (1062), Expect = e-120
 Identities = 219/327 (66%), Positives = 257/327 (78%), Gaps = 10/327 (3%)

Query: 10  DLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQ-------RVLDATQLYL 62
           D++++    E G+   D +++  E P+   +  +   S    Q       R LDATQLYL
Sbjct: 11  DIDDEVLLMEAGI---DTESMSNEGPAVPSVRTKSKNSTALKQHKYIDYTRALDATQLYL 67

Query: 63  GEIGYSPLLTAEEEVYFARRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEE 122
            EIG+SPLLT EEEV+FAR + +GD A R+RMIESNLRLVVKIARRY NRGL+LLDLIEE
Sbjct: 68  NEIGFSPLLTPEEEVHFARLSQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEE 127

Query: 123 GNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTA 182
           GNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIH+VKELNVYLR A
Sbjct: 128 GNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHVVKELNVYLRAA 187

Query: 183 RELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILADEK 242
           REL+ KLDHEPS EEIA  L+KPV +V RML LNER++SVD  LG DS+K LLD L D++
Sbjct: 188 RELTQKLDHEPSPEEIANLLEKPVGEVKRMLGLNERVSSVDVSLGPDSDKTLLDTLTDDR 247

Query: 243 ENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERV 302
              P +  QDDD+ QSI +WL EL  KQREV+ RRFGL G+E++TLEDVG EIGLTRERV
Sbjct: 248 PTDPCELLQDDDLSQSIDQWLSELTDKQREVVIRRFGLRGHESSTLEDVGLEIGLTRERV 307

Query: 303 RQIQVEGLRRLREILQTQGLNIEALFR 329
           RQIQVEGL+RLREIL+  GL+ E+LF+
Sbjct: 308 RQIQVEGLKRLREILEKNGLSSESLFQ 334