Pairwise Alignments

Query, 402 a.a., DNA uptake porin HofQ from Escherichia coli ECRC98

Subject, 412 a.a., type 4 pili biogenesis protein from Pseudomonas putida KT2440

 Score =  236 bits (602), Expect = 9e-67
 Identities = 150/400 (37%), Positives = 226/400 (56%), Gaps = 20/400 (5%)

Query: 12  QKVTLMVDDVPVAQVLQALAEQEKLNLVVSPDVSGTVSLHLTDVPWKQALQTVVKSAGLI 71
           + ++L   DV V  VLQ LA+   +NLV S  V G+V+L L DVPW QAL  V++S GL 
Sbjct: 18  EPLSLNFQDVEVRAVLQVLADYAGVNLVASDAVQGSVTLRLQDVPWDQALDLVLRSKGLS 77

Query: 72  TRQEGNILSVHSIAWQNDNIARQEAEQARAQANLPLENRNITLQYADAGELAKAGEKLLS 131
            RQEGN+L V   A      A     QA      PL    + + +A A +LA+     L 
Sbjct: 78  RRQEGNVLLVAPAAEFAAQSADARVSQALDAHLQPLRRELLPIHHAKAADLAQLLLAGLE 137

Query: 132 AKG----SMTVDKRTNRLLLRDNKTALSALEQWVAQMDLPVGQVELSAHIVTINEKSLRE 187
             G    S++VD+RTN L++      L+ + Q VAQ+D+PV QV + A IV  N    + 
Sbjct: 138 GDGIPPASLSVDERTNTLVVHLPADRLAEMRQLVAQLDVPVRQVAIEARIVEANVDYEKS 197

Query: 188 LGVKWTLADAQHAGG--VGQVTTLGSDLSVATATTHVGFNI--GRINGR-LLDLELSALE 242
           LGV+W        GG   G+    G +L V       G +I  G + G  LLDLELSA+E
Sbjct: 198 LGVRW--------GGPLYGEKLRPGKELFVDLGLERAGSSIGLGLLRGDVLLDLELSAME 249

Query: 243 QKQQLDIIASPRLLASHLQPASIKQGSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQ 302
           +    +II+ P+++ +  + A I +G+E+PYQ +S +SGATSV F+EA L +EVTP +  
Sbjct: 250 KSGNGEIISQPKVVTADKETARILKGTEVPYQETS-QSGATSVSFREASLSLEVTPQITP 308

Query: 303 KGRIRLKLHISQNVPGQVLQQADGEVLAIDKQEIETQVEVKSGETLALGGIFTRKNKSGQ 362
             ++ + + ++++ P  V   A   V  I K E+  +V V  GET+ +GG+++    +  
Sbjct: 309 DNKVIMTVRVTKDEPDYV--NALNNVPPIRKNEVNAKVRVADGETIVIGGVYSTSQNNVV 366

Query: 363 DSVPLLGDIPWFGQLFRHDGKEDERRELVVFITPRLVSSE 402
           D VP  GD+P+ G+LFR D  ++++ EL+VF+TPR++S +
Sbjct: 367 DKVPFFGDLPYVGRLFRRDALQEKKSELLVFLTPRIMSDQ 406