Pairwise Alignments

Query, 402 a.a., DNA uptake porin HofQ from Escherichia coli ECRC98

Subject, 708 a.a., Type IV pilus biogenesis protein PilQ from Pseudomonas sp. S08-1

 Score =  236 bits (602), Expect = 2e-66
 Identities = 152/437 (34%), Positives = 239/437 (54%), Gaps = 54/437 (12%)

Query: 12  QKVTLMVDDVPVAQVLQALAEQEKLNLVVSPDVSGTVSLHLTDVPWKQALQTVVKSAGLI 71
           +K++L   D+ V  VLQ +A+   LNLV S  V G ++L L +VPW QAL  V+K+ GL 
Sbjct: 274 EKLSLNFQDIDVRSVLQLIADFTDLNLVASDTVQGNITLRLQNVPWDQALDLVLKTRGLD 333

Query: 72  TRQEGNILSVHSIAWQNDNIARQEAEQARAQANL----PLENRNITLQYADAGELAKAGE 127
            R+ GN+L +       D IA +E ++  AQ  +    PL    I + YA A ++A   +
Sbjct: 334 KRKVGNVLLIAPA----DEIAARERQELEAQNQIAELAPLRRELIQVNYAKAADIAALFQ 389

Query: 128 KLLSA-------KGSMTVDKRTNRLLLRDNKTALSALEQWVAQMDLPVGQVELSAHIVTI 180
            + +        +G++TVD RTN ++    +  L  L + VAQ+D+PV QV + A IV  
Sbjct: 390 SVAATEGGGAGERGTVTVDDRTNSIIAYQTQDRLDELRRIVAQLDIPVRQVMIEARIVEA 449

Query: 181 NEKSLRELGVKW--TLA--------------------DAQHAGGVGQVTTLGS------- 211
           +    +++GV+W  TL                     D  + G    V T  +       
Sbjct: 450 SVGYEKDIGVRWGGTLGGAGSKWRSYGKDGATGIEDQDGANCGPFAGVCTRPTVENGDSN 509

Query: 212 ------DLSVATATTHVGFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASI 265
                 D+  + AT+ +G      N  +LDL+LSA+E     +II+ P+++ S  + A I
Sbjct: 510 VPVPFVDMGASEATSGIGIGFITDNA-ILDLQLSAMEASGNGEIISQPKVVTSDKETAKI 568

Query: 266 KQGSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQAD 325
            +GSEIPYQ +S  SGATSV FKEA L +EVTP +    RI +++ ++++ P    ++ +
Sbjct: 569 LKGSEIPYQEASS-SGATSVSFKEAALSLEVTPQITPDNRIIMEVKVNKDAPDYD-REVN 626

Query: 326 GEVLAIDKQEIETQVEVKSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDGKED 385
           G V  I+K E+  ++ V+ GET+ +GG+F+       + VPLLGDIP+ G++FR D   D
Sbjct: 627 G-VPPINKNEVNAKILVEDGETIVIGGVFSNTQSKSVEKVPLLGDIPFIGRVFRRDAVRD 685

Query: 386 ERRELVVFITPRLVSSE 402
           E+ EL+VFITPR+++S+
Sbjct: 686 EKNELLVFITPRIMNSQ 702