Pairwise Alignments

Query, 402 a.a., DNA uptake porin HofQ from Escherichia coli ECRC98

Subject, 690 a.a., Type 3 secretion system secretin from Pseudomonas sp. RS175

 Score =  244 bits (622), Expect = 7e-69
 Identities = 154/417 (36%), Positives = 239/417 (57%), Gaps = 33/417 (7%)

Query: 12  QKVTLMVDDVPVAQVLQALAEQEKLNLVVSPDVSGTVSLHLTDVPWKQALQTVVKSAGLI 71
           +K++L   D+ V  VLQ +A+   LNLV S  V G ++L L +VPW QAL  V+K+ GL 
Sbjct: 275 EKLSLNFQDIEVRSVLQLIADFTNLNLVASDTVQGAITLRLQNVPWDQALDLVLKTKGLD 334

Query: 72  TRQEGNILSVHSIAWQNDNIARQEAEQARAQANL----PLENRNITLQYADAGELAKAGE 127
            R+ GN+L V       D IA +E ++  +Q  +    PL    + + YA A ++AK  +
Sbjct: 335 KRKVGNVLLVAPA----DEIAARERQELESQKQIADLAPLRRELLQVNYAKAADIAKLFQ 390

Query: 128 KLLSA------KGSMTVDKRTNRLLLRDNKTALSALEQWVAQMDLPVGQVELSAHIVTIN 181
            + SA      +G++TVD+RTN ++    +  L  L + VAQ+D+PV QV + A IV  N
Sbjct: 391 SVTSAEAKADERGTITVDERTNNIIAYQTQDRLDELRRIVAQLDIPVRQVMIEARIVEAN 450

Query: 182 EKSLRELGVKWTLADAQ----HAGGV--GQVTTLGSDLSVATATTHV---------GFNI 226
               + LGV+W  +       +A GV  G  TT+G+  S +T    V         G  I
Sbjct: 451 VDYDKSLGVRWGGSIQNKGNWNASGVSTGDSTTIGTPGSTSTNQPFVDMGASGNTSGIGI 510

Query: 227 GRINGR-LLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQVSSGESGATSV 285
             I    LLDLEL+A+E+    +I++ P+++ S  + A I +G+EIPYQ +S  SGATSV
Sbjct: 511 AFITDNVLLDLELTAMEKTGNGEIVSQPKVVTSDKETAKILKGTEIPYQEASS-SGATSV 569

Query: 286 EFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQEIETQVEVKSG 345
            FKEA L +EVTP +    RI +++ ++++ P  + +    EV  I K E+  +V V  G
Sbjct: 570 SFKEASLSLEVTPQITPDNRIIMEVKVTKDEPDYLNKVQ--EVPPIKKNEVNAKVLVNDG 627

Query: 346 ETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEDERRELVVFITPRLVSSE 402
           ET+ +GG+F+       D VP LGD+P+ G+LFR D   +++ EL+VF+TPR+++++
Sbjct: 628 ETIVIGGVFSNTQSKVVDKVPFLGDVPYLGRLFRRDVVSEKKSELLVFLTPRIMNNQ 684