Pairwise Alignments

Query, 284 a.a., RNA polymerase sigma factor RpoH from Escherichia coli ECRC98

Subject, 284 a.a., RNA polymerase sigma 70 from Pseudomonas simiae WCS417

 Score =  338 bits (868), Expect = 6e-98
 Identities = 168/285 (58%), Positives = 220/285 (77%), Gaps = 2/285 (0%)

Query: 1   MTDKMQ-SLALAPVGNLDSYIRAANAWPMLSADEERALAEKLHYHGDLEAAKTLILSHLR 59
           MT  +Q + AL P  NL++Y+   N+ P+L+ ++ER LAE L+Y  DL AA+ ++L+HLR
Sbjct: 1   MTTSLQPAYALVPGANLEAYVHTVNSIPLLTPEQERELAESLYYEQDLGAARQMVLAHLR 60

Query: 60  FVVHIARNYAGYGLPQADLIQEGNIGLMKAVRRFNPEVGVRLVSFAVHWIKAEIHEYVLR 119
           FVVHIAR+Y+GYGL QADLIQEGN+GLMKAV+RFNPE+GVRLVSFAVHWIKAEIHE++LR
Sbjct: 61  FVVHIARSYSGYGLAQADLIQEGNVGLMKAVKRFNPEMGVRLVSFAVHWIKAEIHEFILR 120

Query: 120 NWRIVKVATTKAQRKLFFNLRKTKQRLGWFNQDEVEMVARELGVTSKDVREMESRMAAQD 179
           NWRIVKVATTKAQRKLFFNLR  K+RL W N +EV  VA  LGV  ++VREMESR+   D
Sbjct: 121 NWRIVKVATTKAQRKLFFNLRSQKKRLAWLNNEEVHRVAESLGVEPREVREMESRLTGHD 180

Query: 180 MTFDLSSDDDSDSQPMAPVLYLQDKSSNFADGIEDDNWEEQAANRLTDAMQGLDERSQDI 239
           M FD +++ D DS   +P  YL+D   + A  +ED +W + + + L +A++ LD+RS+DI
Sbjct: 181 MAFDPAAEADDDSAFQSPANYLEDHRYDPARQLEDADWSDNSNHNLHEALEVLDDRSRDI 240

Query: 240 IRARWLDEDNKSTLQELADRYGVSAERVRQLEKNAMKKLRAAIEA 284
           +  RWL E+ K+TL +LA +Y VSAER+RQLEK+AM KL+ +I A
Sbjct: 241 LYQRWLAEE-KATLHDLAQKYNVSAERIRQLEKSAMNKLKLSIAA 284