Pairwise Alignments

Query, 284 a.a., RNA polymerase sigma factor RpoH from Escherichia coli ECRC98

Subject, 284 a.a., RNA polymerase factor sigma-32 from Pseudomonas putida KT2440

 Score =  355 bits (911), Expect = e-103
 Identities = 175/285 (61%), Positives = 225/285 (78%), Gaps = 2/285 (0%)

Query: 1   MTDKMQ-SLALAPVGNLDSYIRAANAWPMLSADEERALAEKLHYHGDLEAAKTLILSHLR 59
           MT  +Q + AL P  NL++Y+   N+ P+L+ ++ER L E+L+Y  D+EAA+ ++++HLR
Sbjct: 1   MTTSLQPAYALVPGANLEAYVHTVNSIPLLTVEQERDLGERLYYEQDVEAARQMVMAHLR 60

Query: 60  FVVHIARNYAGYGLPQADLIQEGNIGLMKAVRRFNPEVGVRLVSFAVHWIKAEIHEYVLR 119
           FVVHIAR+YAGYGL QADLIQEGN+GLMKAV+RFNPE+GVRLVSFAVHWIKAEIHE++LR
Sbjct: 61  FVVHIARSYAGYGLAQADLIQEGNVGLMKAVKRFNPEMGVRLVSFAVHWIKAEIHEFILR 120

Query: 120 NWRIVKVATTKAQRKLFFNLRKTKQRLGWFNQDEVEMVARELGVTSKDVREMESRMAAQD 179
           NWRIVKVATTKAQRKLFFNLR  K+RL W N DEV  VA  LGV  ++VREMESR++ QD
Sbjct: 121 NWRIVKVATTKAQRKLFFNLRSQKKRLAWLNNDEVHRVAESLGVEPREVREMESRLSGQD 180

Query: 180 MTFDLSSDDDSDSQPMAPVLYLQDKSSNFADGIEDDNWEEQAANRLTDAMQGLDERSQDI 239
           M FD +++ D DS   +P  YL+D   + A  +ED +W + + + L +A+QGLDERS+DI
Sbjct: 181 MAFDPAAEADDDSAFQSPAHYLEDHRYDPAVQLEDADWSDNSTSNLHEALQGLDERSRDI 240

Query: 240 IRARWLDEDNKSTLQELADRYGVSAERVRQLEKNAMKKLRAAIEA 284
           +  RWL E+ K+TL ELAD+Y VSAER+RQLEKNAM K++A I A
Sbjct: 241 LYQRWLAEE-KATLHELADKYSVSAERIRQLEKNAMNKVKALIAA 284