Pairwise Alignments

Query, 284 a.a., RNA polymerase sigma factor RpoH from Escherichia coli ECRC98

Subject, 300 a.a., RNA polymerase sigma-32 factor from Agrobacterium fabrum C58

 Score =  185 bits (469), Expect = 1e-51
 Identities = 107/284 (37%), Positives = 162/284 (57%), Gaps = 30/284 (10%)

Query: 16  LDSYIRAANAWPMLSADEERALAEKLHYHGDLEAAKTLILSHLRFVVHIARNYAGYGLPQ 75
           L+ Y+     +PML   EE  L ++   HGD +AA  L+ SHLR V  IA  Y GYGLP 
Sbjct: 16  LNRYLDEIRKFPMLEPQEEYMLGKRYAEHGDRDAAHKLVTSHLRLVAKIAMGYRGYGLPI 75

Query: 76  ADLIQEGNIGLMKAVRRFNPEVGVRLVSFAVHWIKAEIHEYVLRNWRIVKVATTKAQRKL 135
            +++ EGN+GLM+AV++F+PE G RL ++A+ WIKA I EY+LR+W +VK+ TT  Q++L
Sbjct: 76  GEVVSEGNVGLMQAVKKFDPERGFRLATYAMWWIKASIQEYILRSWSLVKMGTTANQKRL 135

Query: 136 FFNLRKTKQRL-----GWFNQDEVEMVARELGVTSKDVREMESRMAAQDMTFDLSSDDDS 190
           FFNLR+ K R+     G    + V+ +A +L V+ ++V  M  R+               
Sbjct: 136 FFNLRRLKGRIQAIDDGDLKPEHVKEIATKLQVSEEEVISMNRRL-------------HG 182

Query: 191 DSQPMAPVLYLQDKSSNFADGIEDDNWEEQAA-----------NRLTDAMQGLDERSQDI 239
           D+   AP+   + +S  + D + DD+  ++A              L  AM  L+ER + I
Sbjct: 183 DASLNAPIKASEGESGQWQDWLVDDHESQEAVLIEQDELETRRRMLAKAMGVLNERERRI 242

Query: 240 IRARWLDEDNKSTLQELADRYGVSAERVRQLEKNAMKKLRAAIE 283
             AR L ED   TL+EL+  + +S ERVRQ+E  A +K++ A++
Sbjct: 243 FEARRLAED-PVTLEELSSEFDISRERVRQIEVRAFEKVQEAVQ 285