Pairwise Alignments

Query, 278 a.a., HTH-type transcriptional activator RhaS from Escherichia coli ECRC98

Subject, 282 a.a., L-rhamnose operon transcriptional activator RhaR from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score =  167 bits (423), Expect = 2e-46
 Identities = 91/271 (33%), Positives = 146/271 (53%), Gaps = 4/271 (1%)

Query: 3   VLHSVDFFPSGNASVAIEPRLPQADFPEHHHDFHEIVIVEHGTGIHVFNGQPYTITGGTV 62
           +L   DFF     +V +  R PQ  F EH H+F E+V+V  G G+HV N +PY IT G +
Sbjct: 6   ILLKKDFFTDEQQAVTVADRYPQDVFAEHTHEFCELVMVWRGNGLHVLNERPYRITRGDL 65

Query: 63  CFVRDHDRHLYEHTDNLCLTNVLYRSPDRFQFLAGLNQLLPQELDGQYPSHWRVNHSVLQ 122
            ++R  D+H Y   ++L L N++Y  P+R +       ++P     Q+  HWR+    + 
Sbjct: 66  FYIRAEDKHSYTSVNDLVLQNIIY-CPERLKLNVNWQAMIPGFQGAQWHPHWRLGSMGMN 124

Query: 123 QVRQLVAQMEQQEGENDLPSTASREILFMQLLLLLRKSSLQENLENSASR---LNLLLAW 179
           Q RQ++ Q+E +    D  +    E+LF QL++ L++     +   + SR   L+ L+  
Sbjct: 125 QARQVINQLEHESNGRDPLANEMAELLFGQLVMTLKRHRYATDDLPATSRETLLDKLITA 184

Query: 180 LEDHFADEVNWDAVADQFSLSLRTLHRQLKQQTGLTPQRYLNRLRLMKARHLLRHSEASV 239
           L +        DA   Q   S R L +Q + QTG+T  +YL ++R+  A++LL+HS   +
Sbjct: 185 LANSLECPFALDAFCQQEQCSERVLRQQFRAQTGMTINQYLRQVRICHAQYLLQHSPLMI 244

Query: 240 TDIAYHCGFSDSNHFSTLFRREFNWSPRDIR 270
           ++I+  CGF DSN+FS +F RE   +P   R
Sbjct: 245 SEISMQCGFEDSNYFSVVFTRETGMTPSQWR 275