Pairwise Alignments

Query, 400 a.a., protein transport protein HofC from Escherichia coli ECRC98

Subject, 402 a.a., Type 4 fimbrial assembly protein PilC from Pseudomonas putida KT2440

 Score =  188 bits (478), Expect = 2e-52
 Identities = 125/400 (31%), Positives = 203/400 (50%), Gaps = 11/400 (2%)

Query: 2   ASKQLWRWHGITGDGNAQDGMLWAESRTLLLMALQQQMVTPLSLKRIA--INSAQWRGDK 59
           +S  L+ WHG   +G    G     S   +   L +Q +T  SL+  +    S   R +K
Sbjct: 3   SSSLLYHWHGTDANGAPVSGQTPGRSPAYVRAGLIRQGITVASLRPASGLAFSLPKRREK 62

Query: 60  S--AEVIHQLATLLKAGLTLSEGLALLAEQHPSKQWQALLQSLAHDLEQGIAFSNALLPW 117
           +  A    QLATLLKAG+ L +   ++          ALL+ L  D+  G+  ++AL   
Sbjct: 63  ADPAGFSRQLATLLKAGVPLLQAFEVMGRSGCDAAQAALLERLKQDVASGLGLADALQRH 122

Query: 118 SEVFPPLYQAMIRTGELTGKLDECCFELARQQRAQRQLTDKVKSALRYPIIILAMAIMVV 177
              F  LY  ++R GE +G LD    +LA     +R L  KV+ A+ YP+++L   + V 
Sbjct: 123 PAWFDALYCNLVRVGEQSGTLDRQLEQLAGMLEQRRVLHKKVRKAMIYPLLLLLTGLGVS 182

Query: 178 VAMLHFVLPEFAAIYKTFNTPLPALTQGIMTLADFSGEWGWLLVLFGIMLTIANKLLMRR 237
             +L  V+P+F +++      LPA TQ ++ L+     +  LL++ G+++ +A + L R+
Sbjct: 183 AILLLEVIPKFESMFSGMGAALPAFTQWVINLSTGLSRFAPLLLVMGVVMGVAVRQLYRQ 242

Query: 238 PT----WLIARQKLLLRIPIMGSLMRGQKLTQIFTILALTQSAGITFLQGVESVRETMRC 293
                 W+  R   +L +P+ G L+    L +    LA +  AG+  L  + +V      
Sbjct: 243 HAPARLWISRR---VLGLPVFGKLLGQAALARFARSLATSYGAGVPLLDALGTVARVTGG 299

Query: 294 PYWVQLLTQIQHDISNGHPIWLALKNAGEFSPLCLQLVRTGEASGSLDLMLDNIAHHHRD 353
               Q + +++  ++NG  +  A+     F PL +QL   GE+SG+LD ML+  A H+ +
Sbjct: 300 DLHEQAVLRLRQGMANGQGLNQAMAGEPLFPPLLVQLTAIGESSGTLDQMLEKAASHYEE 359

Query: 354 NTMALADNLAALLEPALLIITGGIIGTLVVAMYLPIFHLG 393
                 D L +LLEPA+++I G ++G LVVAMYLPIF LG
Sbjct: 360 QVSQALDQLTSLLEPAIVLILGLLVGGLVVAMYLPIFQLG 399