Pairwise Alignments

Query, 397 a.a., multidrug efflux RND transporter periplasmic adaptor subunit AcrA from Escherichia coli ECRC98

Subject, 385 a.a., multidrug resistance efflux transporter (NCBI) from Escherichia coli BW25113

 Score =  401 bits (1031), Expect = e-116
 Identities = 208/382 (54%), Positives = 270/382 (70%), Gaps = 4/382 (1%)

Query: 1   MNKNRGFTPLAVVLMLSGSLALTGCDDKQAQQGGQQMPAVGVVTVKTEPLQITTELPGRT 60
           MN+ R    L + L+  G++ LT CDDK A+      P VGVVT+    + + +ELPGRT
Sbjct: 1   MNRRR---KLLIPLLFCGAM-LTACDDKSAENAAAMTPEVGVVTLSPGSVNVLSELPGRT 56

Query: 61  SAYRIAEVRPQVSGIILKRNFKEGSDIEAGVSLYQIDPATYQATYDSAKGDLAKAQAAAN 120
             Y +AE+RPQV GII+KRNF EG  +  G SLYQIDPA  QA  +SAKG LAKA + A+
Sbjct: 57  VPYEVAEIRPQVGGIIIKRNFIEGDKVNQGDSLYQIDPAPLQAELNSAKGSLAKALSTAS 116

Query: 121 IAQLTVNRYQKLLGTQYISKQEYDQALADAQQANAAVTAAKAAVETARINLAYTKVTSPI 180
            A++T NR   LL T Y+S+Q+YD A     +A A VT AKAAVE A INL Y  VTSPI
Sbjct: 117 NARITFNRQASLLKTNYVSRQDYDTARTQLNEAEANVTVAKAAVEQATINLQYANVTSPI 176

Query: 181 SGRIGKSNVTEGALVQNGQATALATVQQLDPIYVDVTQSSNDFLRLKQELANGTLKQENG 240
           +G  GKS+VT GALV   QA +L TVQ+LDPIYVD+TQS  DFLR+K+E+A+G +KQ  G
Sbjct: 177 TGVSGKSSVTVGALVTANQADSLVTVQRLDPIYVDLTQSVQDFLRMKEEVASGQIKQVQG 236

Query: 241 KAKVSLITSDGIKFPQDGTLEFSDVTVDQTTGSITLRAIFPNPDHTLLPGMFVRARLEEG 300
              V L   +G ++ Q GTL+FSD TVD+TTGS+TLRAIFPNP+  LLPGM+V A ++EG
Sbjct: 237 STPVQLNLENGKRYSQTGTLKFSDPTVDETTGSVTLRAIFPNPNGDLLPGMYVTALVDEG 296

Query: 301 LNPNAILVPQQGVTRTPRGDATVLVVGADDKVETRPIVASQAIGDKWLVTEGLKAGDRVV 360
              N +LVPQ+GVT   +G AT L++  DD V+ R I AS+AIGD+W+VT GL+AGDRV+
Sbjct: 297 SRQNVLLVPQEGVTHNAQGKATALILDKDDVVQLREIEASKAIGDQWVVTSGLQAGDRVI 356

Query: 361 ISGLQKVRPGVQVKAQEVTADN 382
           +SGLQ++RPG++ +A   + +N
Sbjct: 357 VSGLQRIRPGIKARAISSSQEN 378