Pairwise Alignments

Query, 397 a.a., multidrug efflux RND transporter periplasmic adaptor subunit AcrA from Escherichia coli ECRC98

Subject, 385 a.a., cytoplasmic membrane lipoprotein (NCBI) from Escherichia coli BW25113

 Score =  516 bits (1328), Expect = e-151
 Identities = 264/388 (68%), Positives = 316/388 (81%), Gaps = 4/388 (1%)

Query: 1   MNKNRGFTPLAVVLMLSGSLALTGCDDKQAQQGGQQMPAVGVVTVKTEPLQITTELPGRT 60
           M K+  F  L   +++S +L + GC+DK  ++     P V V  VKT PL++ TELPGRT
Sbjct: 1   MTKHARFFLLPSFILISAAL-IAGCNDKGEEKAHVGEPQVTVHIVKTAPLEVKTELPGRT 59

Query: 61  SAYRIAEVRPQVSGIILKRNFKEGSDIEAGVSLYQIDPATYQATYDSAKGDLAKAQAAAN 120
           +AYRIAEVRPQVSGI+L RNF EGSD++AG SLYQIDPATYQA YDSAKG+LAK++AAA 
Sbjct: 60  NAYRIAEVRPQVSGIVLNRNFTEGSDVQAGQSLYQIDPATYQANYDSAKGELAKSEAAAA 119

Query: 121 IAQLTVNRYQKLLGTQYISKQEYDQALADAQQANAAVTAAKAAVETARINLAYTKVTSPI 180
           IA LTV RY  L+GT+YIS+QEYDQA+ADA+QA+AAV AAKA VE+ARINLAYTKVT+PI
Sbjct: 120 IAHLTVKRYVPLVGTKYISQQEYDQAIADARQADAAVIAAKATVESARINLAYTKVTAPI 179

Query: 181 SGRIGKSNVTEGALVQNGQATALATVQQLDPIYVDVTQSSNDFLRLKQELANGTLKQENG 240
           SGRIGKS VTEGALV NGQ T LATVQQLDPIYVDVTQSSNDF+RLKQ +  G L +EN 
Sbjct: 180 SGRIGKSTVTEGALVTNGQTTELATVQQLDPIYVDVTQSSNDFMRLKQSVEQGNLHKENA 239

Query: 241 KAKVSLITSDGIKFPQDGTLEFSDVTVDQTTGSITLRAIFPNPDHTLLPGMFVRARLEEG 300
            + V L+  +G  +P  GTL+FSDVTVD++TGSITLRA+FPNP HTLLPGMFVRAR++EG
Sbjct: 240 TSNVELVMENGQTYPLKGTLQFSDVTVDESTGSITLRAVFPNPQHTLLPGMFVRARIDEG 299

Query: 301 LNPNAILVPQQGVTRTPRGDATVLVVGADDKVETRPIVASQAIGDKWLVTEGLKAGDRVV 360
           + P+AIL+PQQGV+RTPRGDATVL+V    +VE RP+VASQAIGDKWL++EGLK+GD+V+
Sbjct: 300 VQPDAILIPQQGVSRTPRGDATVLIVNDKSQVEARPVVASQAIGDKWLISEGLKSGDQVI 359

Query: 361 ISGLQKVRPGVQVKAQEVTADNNQQAAS 388
           +SGLQK RPG QVKA   T D     AS
Sbjct: 360 VSGLQKARPGEQVKA---TTDTPADTAS 384