Pairwise Alignments

Query, 377 a.a., putative multidrug ABC transporter permease YbhS from Escherichia coli ECRC98

Subject, 361 a.a., Domain of unknown function / Efflux ABC transporter, permease protein from Pseudomonas sp. S08-1

 Score =  176 bits (447), Expect = 7e-49
 Identities = 108/374 (28%), Positives = 206/374 (55%), Gaps = 15/374 (4%)

Query: 6   LSWRRVRALCVKETRQIVRDPSSWLIAVVIPLLLLFIFGYGINLDSSKLRVGILLEQRSE 65
           ++ RR+ A+ +KE RQ+ RD  ++++   +PLL L +FGY IN+D   +   +L +  + 
Sbjct: 1   MNLRRMGAVVLKELRQLRRDKLTFVMIAGVPLLQLVLFGYAINMDVRGIEAAVLDQANTA 60

Query: 66  AALDFTHTMTGSPYIDATIS-DNRQELIAKMQAGKIRGLVVIPVDFAEQMERANAT-API 123
            + +    +  S  I+     DN Q++   M+ G+I   +V+P DF  +++R + + AP+
Sbjct: 61  QSREAVAEIASSQVIEVKYRLDNPQQIDQLMRQGRISAALVVPRDFDARLQRHDPSRAPL 120

Query: 124 QVITDGSEPNTANFVQGYVEGIWQIWQMQRAEDNGQTFEPLIDVQTRYWFNPAAISQHFI 183
           Q++ DGS+ +     +          Q+      G +  P ++V   Y  NP  ++    
Sbjct: 121 QLVVDGSDQSVQASAR----------QLAAFPLAGWSGVPGVEVVNFY--NPERLAPLNT 168

Query: 184 IPGAVTIIMTVIGAILTSLVVAREWERGTMEALLSTEITRTELLLCKLIPYYFLGMLAML 243
           +PG + +I+T+   + T++ + RE E G +E L++T ++  EL + K++P+  +G++ + 
Sbjct: 169 VPGLLGVILTMTMVMFTAVALVREREHGNLELLIATPVSPWELTIGKVLPFVGIGLIQVS 228

Query: 244 LCMLVSVFILGVPYRGSLLILFFISSLFLLSTLGMGLLISTITRNQFNAAQVALNAAFLP 303
           + ++VS ++  VP RGSLL L+  S LF++++L +G+ +ST+   QF A Q+A    FLP
Sbjct: 229 VILVVSHWMFAVPVRGSLLDLYGASLLFIIASLALGVWLSTLASTQFQAMQLAF-FTFLP 287

Query: 304 SIMLSGFIFQIDSMPAVIRAVTYIIPARYFVSTLQSLFLAGNIPVVLVVNVLFLIASAVM 363
            I+LSGF+F    MP V + +  ++P  +++   + + L     + L + +L LI     
Sbjct: 288 QILLSGFMFPFAGMPKVAQWIAELMPLTHYLRLSRGIMLREAGLLELWLEMLILIVFCAA 347

Query: 364 FIGLTWLKTKRRLD 377
            +GL   +  +RLD
Sbjct: 348 LLGLAVSRIHKRLD 361