Pairwise Alignments

Query, 307 a.a., Uncharacterized HTH-type transcriptional regulator YdcI from Escherichia coli ECRC98

Subject, 323 a.a., Transcriptional regulator, LysR family from Pseudomonas putida KT2440

 Score =  115 bits (289), Expect = 1e-30
 Identities = 83/299 (27%), Positives = 132/299 (44%), Gaps = 1/299 (0%)

Query: 4   NSLFSQRIRLRHLHTFVAVAQQGTLGRAAETLNLSQPALSKTLNELEQLTGARLFERGRQ 63
           +S F   IR +HL     +A+   +   A  +NLSQPALSK L +LE+  G  LFER  +
Sbjct: 7   HSSFCNWIRYKHLVLIDTLARTRNMHATATRMNLSQPALSKMLRDLEEQFGFALFERLPR 66

Query: 64  GAQLTLPGEQFLTHAVRVLDAINTAGQSLHRKEGPNNDVVRVGALPTAALGILPSVIGQF 123
               T  GE  + +A   L         ++R     +  +RVG +  A   +LP  I   
Sbjct: 67  SMPPTELGEYVVRYAQGALAESQQFVDQVNRLRNGGHGFIRVGGIFAATALVLPQAIAAI 126

Query: 124 HQQQKETTLQVATMSNPMILAGLKTGEIDIGIGRMSDPELMTGLNYELLFLESLKLVVRP 183
             +    +++V   S+  +L  L+  ++DI IGR ++       +++ L  E   LVV  
Sbjct: 127 KARSPLLSIEVVEHSSDHLLTMLEQNKLDIMIGRFTEERFGQLFDFQPLEPEPFSLVVNS 186

Query: 184 NHPLLQ-ENVTLSRVLEWPVVVSPEGTAPRQHSDALVQSQGCKIPSGCIETLSASLSRQL 242
            HPL Q +N  L  + +WP V+ P GT  R   +   +  G   P+ C+ET+S  +  QL
Sbjct: 187 EHPLNQLDNTPLEALGDWPWVLYPVGTPIRNRLEQAFRVAGIATPADCVETISMPMFLQL 246

Query: 243 TVEYDYVWFVPSGAVKDDLRHATLVALPVPGHGAGEPIGILTRVDATFSSGCQLMINAI 301
                 +  +P   V   L       L  P        G++TR D   S+  +  +  +
Sbjct: 247 LQSAPMIAMLPRSMVAAQLASGQFKELRSPLQVPALEYGVVTRKDEPLSASARAFVEIL 305