Pairwise Alignments

Query, 307 a.a., Uncharacterized HTH-type transcriptional regulator YdcI from Escherichia coli ECRC98

Subject, 302 a.a., putative DNA-binding transcriptional regulator of abgABT operon from Escherichia coli BL21

 Score =  117 bits (292), Expect = 4e-31
 Identities = 77/264 (29%), Positives = 139/264 (52%), Gaps = 6/264 (2%)

Query: 10  RIRLRHLHTFVAVAQQGTLGRAAETLNLSQPALSKTLNELEQLTGARLFERGRQGAQLTL 69
           ++++  +  FV VA+QG++  A+  LN+SQPALSK++ ELE+   A+LF R  +G  LT 
Sbjct: 4   QVKIHQIRAFVEVARQGSIRGASRMLNMSQPALSKSIQELEEGLAAQLFFRRSKGVTLTD 63

Query: 70  PGEQFLTHAVRVLDAINTAGQSLHRKEGPNNDVVRVGALPTAALGILPSVIGQFHQQQKE 129
            GE F  HA  +L+ +  A + + +++G     + +G   + +  ++P+VI +FHQQ  +
Sbjct: 64  AGESFYQHASLILEELRAAQEDIRQRQGQLAGQINIGMGASISRSLMPAVISRFHQQHPQ 123

Query: 130 TTLQVATMSNPMILAGLKTGEIDIGIGRMSDPELMTGLNYELLFLESLKLVVRPNHPLLQ 189
             +++       ++  L+ GE+D  I             +E L  +   +  RP HP + 
Sbjct: 124 VKVRIMEGQLVSMINELRQGELDFTINTYYQGPYDHEFTFEKLLEKQFAIFCRPGHPAIG 183

Query: 190 ENVTLSRVLEWP-VVVSPEGTAPRQHSDAL-VQSQGCKIPSGCIETLSASLSRQLTVEYD 247
              ++ ++L++   + +P G+  +Q S+ L  Q+Q  ++   C ET SA +S  L  + D
Sbjct: 184 AR-SIKQLLDYSWTMPTPHGSYYKQLSELLDDQAQTPQVGVVC-ETFSACIS--LVAKSD 239

Query: 248 YVWFVPSGAVKDDLRHATLVALPV 271
           ++  +P     D L    LV LPV
Sbjct: 240 FLSILPEEMGCDPLHGQGLVMLPV 263