Pairwise Alignments

Query, 334 a.a., L,D-transpeptidase LdtE from Escherichia coli ECRC98

Subject, 310 a.a., L,D-transpeptidase linking Lpp to murein from Escherichia coli BL21

 Score =  249 bits (637), Expect = 5e-71
 Identities = 138/295 (46%), Positives = 186/295 (63%), Gaps = 8/295 (2%)

Query: 17  AIQAAWAVDYPLPPTGSRLVGQNQTYTVQEGDKN-LQAIARRFDTAAMLILEAN-NTIAP 74
           A   + AV YPLPP GSRLVGQ+ T TV + +   L+  A ++      +LEAN      
Sbjct: 15  ASHTSLAVTYPLPPEGSRLVGQSFTVTVPDHNTQPLETFAAQYGQGLSNMLEANPGADVF 74

Query: 75  VPKPGTTITIPSQLLLPDAPRQGIIVNLAELRLYYYPPGENIVQVYPIGIGLQGLETP-V 133
           +PK G+ +TIP QL+LPD  R+GI+VN+AE+RLYYYPP  N V+V+PIGIG  G ETP  
Sbjct: 75  LPKSGSQLTIPQQLILPDTVRKGIVVNVAEMRLYYYPPDSNTVEVFPIGIGQAGRETPRN 134

Query: 134 METRVGQKIPNPTWTPTAGIRQRSLERGIKLPPVVPAGPNNPLGRYALRLAHGNGEYLIH 193
             T V +K   PTWTPT   R+   +RG  LP  VPAGP+NP+G YA+ +      Y IH
Sbjct: 135 WVTTVERKQEAPTWTPTPNTRREYAKRGESLPAFVPAGPDNPMGLYAIYIGR---LYAIH 191

Query: 194 GTSAPDSVGLRVSSGCIRMNAPDIKALFSSVRTGTPVKVINEPVKYSVEPNGMRYVEVHR 253
           GT+A   +GLRVS GCIR+   DIK LF +V  GT V++I++PVKY+ EP+G  ++EVH 
Sbjct: 192 GTNANFGIGLRVSQGCIRLRNDDIKYLFDNVPVGTRVQIIDQPVKYTTEPDGSNWLEVHE 251

Query: 254 PLSAE--EQQNVQTMPYTLPAGFTQFKDNKAVDQKLVDKALYRRAGYPVAVSSGA 306
           PLS    E ++ + +P  +      F + + VD    + AL RR+G PV +SSG+
Sbjct: 252 PLSRNRAEYESDRKVPLPVTPSLRAFINGQEVDVNRANAALQRRSGMPVQISSGS 306