Pairwise Alignments

Query, 340 a.a., autoinducer 2 ABC transporter substrate-binding protein LsrB from Escherichia coli ECRC62

Subject, 305 a.a., Ribose ABC transport system, periplasmic ribose-binding protein RbsB (TC 3.A.1.2.1) from Pseudomonas fluorescens GW456-L13

 Score = 70.5 bits (171), Expect = 5e-17
 Identities = 75/303 (24%), Positives = 134/303 (44%), Gaps = 18/303 (5%)

Query: 10  ALLSALGIAAISMNVQAAERIAFIPKLVGVGFFTSGGNGAQQAGKELS--VDVTYDG-PT 66
           A  +AL +++         ++A + K +   FF +  +GA+   K+ S   D+  +G   
Sbjct: 4   AASAALPVSSAFAETTEKPKVALVMKSLANEFFLTMEDGAKAYQKDHSGEFDLISNGIKD 63

Query: 67  EPSVSGQVQLINNFVNQGYNAIIVSAVSPDGLCPALKRAMQRGVRVLTWDSDTKPE-CRS 125
           E   +GQ +++   +    NA++++      + P +K+A+  G+ V+  D+   P   +S
Sbjct: 64  ETDTAGQTRIVEQMILAKVNALVIAPADSKAMVPVIKKAIDAGITVINIDNQLDPAVVKS 123

Query: 126 YYIN---QGTPAQLGGMLV-DMAARQVNKDKAKVAFFYSSPTVTDQNQWVKEAKAKIAKE 181
             IN    G   + G  LV D  A+Q+ K   +V       T T+  Q  + A  K A E
Sbjct: 124 KNINVPFVGPDNRKGARLVGDYLAKQL-KAGDEVGIIEGVSTTTNAQQ--RTAGFKDAME 180

Query: 182 HPGWEIVTTQFGYNDATKSLQTAEGILKAYSDLDAIIA-PDANALPAAAQAAENLKNDKV 240
               ++V+ Q G  +  K  + A  IL  Y    A++A  D+ A+ A +      K  KV
Sbjct: 181 AAQIKVVSLQSGDWEIDKGNKVAASILSEYPQTKALLAGNDSMAVGAVSAVRAAGKAGKV 240

Query: 241 AIVGFSTPNVMRPYVERGTVKEFGLWDVVQQGKISVYVADALLKKGSMKTGDKLDIQGVG 300
            +VG+   N ++P ++ G V         +Q    +  A  +LK      G+K+D    G
Sbjct: 241 QVVGYDNINAIQPMLKDGRVLATADQFAAKQAVFGIETALKILK------GEKVDGGANG 294

Query: 301 QVE 303
            +E
Sbjct: 295 VIE 297