Pairwise Alignments

Query, 340 a.a., autoinducer 2 ABC transporter substrate-binding protein LsrB from Escherichia coli ECRC62

Subject, 328 a.a., Autoinducer 2-binding protein LsrB from Escherichia coli HS(pFamp)R (ATCC 700891)

 Score =  101 bits (251), Expect = 3e-26
 Identities = 89/325 (27%), Positives = 149/325 (45%), Gaps = 20/325 (6%)

Query: 15  LGIAAISMNVQAAERIAF-IPKLVGVGFFTSGGNGAQQAGKELSVDVTYDGPTEPSVSGQ 73
           LG A IS  +QAAE++   I K+ G+ +F   G G  +AGK   V+ +  GP+      Q
Sbjct: 16  LGAALISAPLQAAEKVVVNISKVDGMPWFNRMGEGVVEAGKAFGVNASQVGPSSTDAPQQ 75

Query: 74  VQLINNFVNQGYNAIIVSAVSPDGLCPALKRAMQRGVRVLTWDSDTKPECRSYYINQGTP 133
           V++I + + +  NAI +     + L P  K+A   G+ VLT +S  +P   ++ I     
Sbjct: 76  VKIIEDLIARKVNAITIVPNDANVLEPVFKKARDAGIVVLTNESPGQPSA-NWDIEIIDN 134

Query: 134 AQLGGMLVDMAARQVNKDKAKVAFFYSSPTVTDQNQWVKEAKAKIAKEH-PGWEIVTTQF 192
            +     V+  A+++   K     +  S TV   N W  +   K  KEH P    VT + 
Sbjct: 135 EKFAAEYVEHMAKRMG-GKGGYVIYVGSLTVPQHNLWA-DLLVKYQKEHYPDMHEVTRRM 192

Query: 193 GYNDAT-KSLQTAEGILKAYSDLDAIIAPDANALPAAAQAA-ENLKNDKVAIVGFSTPNV 250
              ++   S +T   ++K Y DL A+++  +N    A +A  E    +KVA+ G   P+ 
Sbjct: 193 PVAESVDDSRRTTLDLMKTYPDLKAVVSFGSNGPIGAGRAVKEKRAKNKVAVYGMMIPSQ 252

Query: 251 MRPYVERGTVKEFGLWDVVQQGKISVYVADALLKKGSMKTGDKLDIQGVGQVEVSPNSVQ 310
               ++ G + E   +D    G     VA  LLK   +K G  L++Q +G+ +V  +   
Sbjct: 253 AASLIKSGDITEGITYDPASAGYALAAVASTLLKGEEIKPG--LEMQNLGKADVDMD--- 307

Query: 311 GYDYEADGNGIVLLPERVIFNKENI 335
                     I+   + ++ NK+NI
Sbjct: 308 --------KRIIRFHKVLLVNKDNI 324