Pairwise Alignments

Query, 340 a.a., autoinducer 2 ABC transporter substrate-binding protein LsrB from Escherichia coli ECRC62

Subject, 297 a.a., ABC transporter periplasmic-binding protein YphF from Escherichia coli HS(pFamp)R (ATCC 700891)

 Score = 58.2 bits (139), Expect = 3e-13
 Identities = 56/216 (25%), Positives = 100/216 (46%), Gaps = 16/216 (7%)

Query: 40  GFFTSGGNGAQQAGKELSVDVTY-DGPTEPSVSGQVQLINNFVNQGYNAIIVSAVSPDGL 98
           G++     G Q A K+ SV V   +   +  +S +   ++  V +  +AII+SAVS +G 
Sbjct: 12  GYYAGVRQGVQDAAKDSSVQVQLIETNAQGDISKECTFVDTLVARNVDAIILSAVSENGS 71

Query: 99  CPALKRAMQRGVRVLTWDSDTKPECRSYYINQ---GTPAQLGGMLVDMAARQ--VNK-DK 152
              ++RA + G+ V+ +++    +    Y++    G P + G  L + AA     NK D+
Sbjct: 72  SRTVRRASEAGIPVICYNTCINQKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQ 131

Query: 153 AKVAFFYSSP---TVTDQNQWVKEAKAKIAKEHPGWEIVTTQFGYNDATKSLQTAEGILK 209
            K+A          V  +  + +  KA++    PG +IV  Q G     K++   E ++ 
Sbjct: 132 PKIAVINCEAFEVCVQRRKGFEEVLKARV----PGAQIVANQEG-TVLDKAISVGEKLII 186

Query: 210 AYSDLDAIIAPDANALPAAAQAAENLKN-DKVAIVG 244
           +  DL+AI+     A   A +A  N     K+A+ G
Sbjct: 187 STPDLNAIMGESGGATLGAVKAVRNQNQAGKIAVFG 222