Pairwise Alignments

Query, 340 a.a., autoinducer 2 ABC transporter substrate-binding protein LsrB from Escherichia coli ECRC62

Subject, 314 a.a., Ribose import binding protein RbsB from Azospirillum sp. SherDot2

 Score = 80.1 bits (196), Expect = 7e-20
 Identities = 77/288 (26%), Positives = 125/288 (43%), Gaps = 8/288 (2%)

Query: 3   LHRFKKIALLSALGIAAISMNVQAAERIAFIPKLVGVGFFTSGGNGAQQAGKELS-VDVT 61
           + RF    L SA+ +AA S  + A + IA + K V   F+ +   GA  A KE     +T
Sbjct: 1   MKRFVSACLASAVALAAGSA-LAADKEIAVVVKTVNSTFWQNVQKGASTAQKEADGYTMT 59

Query: 62  YDGPT-EPSVSGQVQLINNFVNQGYNAIIVSAVSPDGLCPALKRAMQRGVRVLTWDSDTK 120
           + GP  E +++ QV ++ N VN+    I+++   PD L P LK+A +  + V+  DS   
Sbjct: 60  FQGPAAESAIADQVNMVENAVNRKVAGIVLAPSDPDALVPVLKKAWEAKIPVVLIDSPVS 119

Query: 121 PECRSYY-INQGTPAQLGGMLVDMAARQVNKDKAKVAFF-YSSPTVTDQNQWVKEAKAKI 178
              + YY     T     G L   A         K+A   Y +   ++  +       K 
Sbjct: 120 DAGKQYYQAMLSTDNVKAGELCAKALIDKVGTSGKIAVMSYVAGAGSEIGR--VGGFTKY 177

Query: 179 AKEHPGWEIVTTQFGYNDATKSLQTAEGILKAYSDLDAII-APDANALPAAAQAAENLKN 237
            K+H   EIV   +  +    +L     +L A  DL  I  A +  A+      A++ K 
Sbjct: 178 IKDHSKLEIVGPFYSQSQMATALNQTTDVLAANPDLKGIFGANEPTAIGMGRALAQSGKA 237

Query: 238 DKVAIVGFSTPNVMRPYVERGTVKEFGLWDVVQQGKISVYVADALLKK 285
             +A VGF     ++ +V+ GT++   +    Q G + V  A  L K+
Sbjct: 238 GHIAAVGFDGNQDLQGFVKDGTLEAIAVQGSYQMGYLGVQTAVKLTKR 285