Pairwise Alignments

Query, 340 a.a., autoinducer 2 ABC transporter substrate-binding protein LsrB from Escherichia coli ECRC62

Subject, 348 a.a., Autoinducer 2-binding protein LsrB from Azospirillum sp. SherDot2

 Score = 95.9 bits (237), Expect = 1e-24
 Identities = 78/315 (24%), Positives = 133/315 (42%), Gaps = 15/315 (4%)

Query: 30  IAFIPKLVGVGFFTSGGNGAQQAGKELSVDVTYDGPTEPSVSGQVQLINNFVNQGYNAII 89
           IA + K+ G+ +F    +G +Q   +   D    GP++   + QVQL+ N + QG +AI 
Sbjct: 45  IATVVKVDGIAWFDRMRDGVKQFASDTGHDTWMVGPSQADAAAQVQLVENLIAQGVDAIA 104

Query: 90  VSAVSPDGLCPALKRAMQRGVRVLTWDSDTKPECRSYYINQGTPAQLGGMLVDMAARQVN 149
           +   S + + P LK+A  RG+ V+  ++ +  +   Y +        G  L+++  + + 
Sbjct: 105 IVPFSVEAVEPVLKKARDRGIVVIAHEA-SNIQNADYVLEAFDNFAYGAKLMEVLGKAMG 163

Query: 150 KDKAKVAFFYSSPTVTDQNQWVKEAKAKIAKEHPGWEIVTTQF-GYNDATKSLQTAEGIL 208
             + K      S T   QN+W+  A A   +  P  ++VT +   Y+DA       + +L
Sbjct: 164 -GEGKYVCTVGSLTSKSQNEWIDGAVAYQKEHFPKMQMVTNRLETYDDANTDYNKLKEVL 222

Query: 209 KAYSDLDAII-APDANALPAAAQAAENLKNDKVAIVGFSTPNVMRPYVERGTVKEFGLWD 267
             Y DL  I+  P   +  A    AE    +K+   G    +V   Y+ +G ++    WD
Sbjct: 223 TTYPDLKGIVGGPMPTSAGAGRLVAERGLKNKLFFSGTGLVSVAGQYLTQGDIQYIQFWD 282

Query: 268 VVQQGKISVYVADALL--KKGSMKTGDKLDIQGVGQVEVSPNSVQGYDYEADGNGIVLLP 325
               G     +A   L  KK  +K G  L + G   +     +     Y     G+    
Sbjct: 283 PAVAGYAMNMLAVMALDGKKDQIKAGLNLGLPGYTALTTPQGAKANLLYGQGWVGV---- 338

Query: 326 ERVIFNKENIGKYDF 340
                 KEN+G YDF
Sbjct: 339 -----TKENMGSYDF 348