Pairwise Alignments

Query, 374 a.a., porin OmpC from Escherichia coli ECRC62

Subject, 362 a.a., outer membrane porin 1a (Ia;b;F) (NCBI) from Escherichia coli BW25113

 Score =  422 bits (1085), Expect = e-123
 Identities = 227/387 (58%), Positives = 272/387 (70%), Gaps = 39/387 (10%)

Query: 1   MKVKVLSLLVPALLVAGAANAAEVYNKDGNKLDLYGKVDGLHYFSDNKSED-----GDQT 55
           MK  +L+++VPALLVAG ANAAE+YNKDGNK+DLYGK  GLHYFS    E+     GD T
Sbjct: 2   MKRNILAVIVPALLVAGTANAAEIYNKDGNKVDLYGKAVGLHYFSKGNGENSYGGNGDMT 61

Query: 56  YVRLGFKGETQVTDQLTGYGQWEYQIQGNTSE--DNKENSWTRVAFAGLKFQDVGSFDYG 113
           Y RLGFKGETQ+   LTGYGQWEY  QGN SE  D +  + TR+AFAGLK+ DVGSFDYG
Sbjct: 62  YARLGFKGETQINSDLTGYGQWEYNFQGNNSEGADAQTGNKTRLAFAGLKYADVGSFDYG 121

Query: 114 RNYGVVYDVTSWTDVLPEFGGDTYGSDNFMQQRGNGYATYRNTDFFGLVDGLNFAVQYQG 173
           RNYGVVYD   +TD+LPEFGGDT  SD+F   R  G ATYRN++FFGLVDGLNFAVQY G
Sbjct: 122 RNYGVVYDALGYTDMLPEFGGDTAYSDDFFVGRVGGVATYRNSNFFGLVDGLNFAVQYLG 181

Query: 174 KNGSVSGEGMTNNGRGALRQNGDGVGGSITYDYEGFGIGAAVSSSKRTDDQNFGLNGYGE 233
           KN   +          A R NGDGVGGSI+Y+YEGFGI  A  ++ RT+ Q         
Sbjct: 182 KNERDT----------ARRSNGDGVGGSISYEYEGFGIVGAYGAADRTNLQE-------A 224

Query: 234 RYLGNGDRAETYTGGLKYDANNIYLAAQYTQTYNATRV-----GSLGWANKAQNFEAVAQ 288
           + LGNG +AE +  GLKYDANNIYLAA Y +T NAT +      + G+ANK Q+   VAQ
Sbjct: 225 QPLGNGKKAEQWATGLKYDANNIYLAANYGETRNATPITNKFTNTSGFANKTQDVLLVAQ 284

Query: 289 YQFDFGLRPSVAYLQSKGKNLGVVAGRNYDDEDILKYVDVGATYYFNKNMSTYVDYKINL 348
           YQFDFGLRPS+AY +SK K++         D D++ Y +VGATYYFNKNMSTYVDY IN 
Sbjct: 285 YQFDFGLRPSIAYTKSKAKDV-----EGIGDVDLVNYFEVGATYYFNKNMSTYVDYIINQ 339

Query: 349 LD-DNQFTRDAGINTDNIVALGLVYQF 374
           +D DN+     G+ +D+ VA+G+VYQF
Sbjct: 340 IDSDNKL----GVGSDDTVAVGIVYQF 362