Pairwise Alignments

Query, 407 a.a., integrase from Escherichia coli ECRC62

Subject, 411 a.a., integrase from Pseudomonas simiae WCS417

 Score =  107 bits (268), Expect = 5e-28
 Identities = 100/377 (26%), Positives = 157/377 (41%), Gaps = 14/377 (3%)

Query: 28  DGEGLSVKVSKQGNVSWVFSYRLGGRGSKLERLTLGRYPDMPLKLAREKREQCRQWLAGG 87
           DG GL  +V   G  SW   Y+      K   L LG YP++   LAR+K  Q R+  + G
Sbjct: 30  DGNGLYFRVKPNGQKSWELRYKKPD--GKWSWLGLGGYPEISGSLARQKAAQLREDASTG 87

Query: 88  LDPKTEIELSTEETLKPVTVKDALEYWLVNYARRKRSD-----EALVRAQLRKHIYPRLG 142
            +P   +     +    V   +  E     +   +R+         V   L  H++P  G
Sbjct: 88  KNPL--VSKQARKVADQVAANNTFEALGREWFEARRTSWESGTSRRVLGALELHVFPVFG 145

Query: 143 RYPITRCETRHWVACFDEINQTKPMTA-GRMFQISKQALRFCKVRRYAASDALAFLTIQD 201
           +   T      W+     + Q   +   GR+    K+     +V   A  + L  L+ + 
Sbjct: 146 KRVYTEILPLEWMEFLRGMEQKGIIEQMGRVRAFCKEIYDLARVTGRAVHNPLEGLS-KF 204

Query: 202 VGQPSGQRDRVLSDSELADVWRCTDSDDQQPYYSRLLKMLVLFGARTMEVRLSRWSEWDF 261
           +   S +    +S  EL  + R  +S          L++L L  +R  E+R +RWSE D 
Sbjct: 205 LQSRSAENYAHVSIEELPALLRAINSYPHAKDVRIGLRLLSLLASRPSEIREARWSEIDL 264

Query: 262 TSWIWTVPKEHSKTREKIVRSIPEAIRPWLEELKRETGKTGLLL--GEDRTRQAVSLKGR 319
           T  +WT+P E  K R + V  +       L EL+  TG   LL    +DRT    +    
Sbjct: 265 TKKLWTIPAERMKRRREHVVPLSRQSIEALTELRTLTGAYPLLFPGRKDRTIPRSNTVFL 324

Query: 320 RLFKDFHHNEPWTLHDLRRTFSTGLNNMGIAPHIVELLLGHALPGVMAIYNRSLYLPEKL 379
              +   +    T H  R   ST LN  G   + +E  L HA  G+  +YN+++YLP++ 
Sbjct: 325 MALRRLGYAGRQTGHGFRHIASTILNEQGFDENHIEAQLSHAKEGIAGVYNKAVYLPQRR 384

Query: 380 DALNKWYDRL-ELLAGN 395
             +  + D L EL+ GN
Sbjct: 385 VMMQWYADHLDELVEGN 401