Pairwise Alignments

Query, 585 a.a., DUF3300 domain-containing protein from Escherichia coli ECRC62

Subject, 540 a.a., FIG01200701: possible membrane protein from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score =  614 bits (1584), Expect = e-180
 Identities = 335/584 (57%), Positives = 402/584 (68%), Gaps = 60/584 (10%)

Query: 3   MTLPFKPHVLALICSAGLCAASTGLYIKSRTVEAPVEPQSTQQTAPDITAVTLPATVSAP 62
           MTLPFKPH++AL+CSAGL AAS  LY+KSR  EAP +  +   + P  TAV  P      
Sbjct: 1   MTLPFKPHLIALVCSAGLFAASGVLYVKSRAPEAPAQA-AAPASEPTQTAVPAP------ 53

Query: 63  PVTPAVVKSAFSTAQIDQWVAPVALYPDSLLSQVLMASTYPANVAQAVQWSHDNPLKQGD 122
                V K+ F+TAQIDQWVAPVALYPD+LLSQVLMASTYPANV QAVQWS DNP  QGD
Sbjct: 54  -----VAKTTFTTAQIDQWVAPVALYPDALLSQVLMASTYPANVVQAVQWSRDNPTLQGD 108

Query: 123 AAIQAVSDQPWDASVKSLVAFPQLMALMGENPQWVQNLGDAFLAQPQDVMDSVQRLRQLA 182
           AAIQAV+ QPWD SVKSLVAFPQLMALMGENPQWVQNLGDAFLAQPQDVMD+VQRLR LA
Sbjct: 109 AAIQAVASQPWDPSVKSLVAFPQLMALMGENPQWVQNLGDAFLAQPQDVMDAVQRLRLLA 168

Query: 183 QQTGSLKSSTEQKVITTTKKAVPVKQTVTAPVIPSNTVLTASPVITEPATTVISIEPANP 242
           QQTGSLKS+ +Q V +  K +     T T       T  +AS   T   +TVI IEPANP
Sbjct: 169 QQTGSLKSTPQQTVTSVPKSSASTAVTTT-------TTTSASTPATP--STVIKIEPANP 219

Query: 243 DVVYIPNYNPTVVYGNWANTAYPPVYLPPPAGEPFIDSFVRGFGYSMGVATTYALFSSID 302
            VVY+PNYNP  VYG W NTAYPPVYLPPP G+ F DSFV+GFGYS+GVATTYALFSSID
Sbjct: 220 QVVYVPNYNPATVYGAWPNTAYPPVYLPPPPGQQFADSFVKGFGYSLGVATTYALFSSID 279

Query: 303 WDDDDHDHHHHDDDDYHHHDGGHRDGNGWQHNGDNINIDVNNFNRITGEHLTDKNMAWRH 362
           WDDDDH  HHHDDD  HH D  H  GNG+QHNGDNINI+VNNFNRI+G++L  + M W+H
Sbjct: 280 WDDDDH--HHHDDD--HHDDDYHHGGNGYQHNGDNININVNNFNRISGQNLPGQTMGWQH 335

Query: 363 NPNYRNGVPYHDQDMAKRFHQTDVNGGMSATQLPAPTRDSQRQAAASQFQQRTHAAPVI- 421
           NP +RNGVPY +  +A+RFH T+V+GG+SATQ    +RDSQRQAA +QFQQR+H A    
Sbjct: 336 NPAWRNGVPYPNNTVAQRFHPTNVSGGLSATQQAPVSRDSQRQAAMTQFQQRSHTANASL 395

Query: 422 ----TRDTERQAAAQRFNEA---EHYGSYDDFRDFSRRQPLTQQQKDAARQRYQSASPEQ 474
               TRD +R+AA+Q+ N+     +Y  YD  ++ SRR+        AA+Q    ++ +Q
Sbjct: 396 PAPGTRDAQRKAASQQLNQIAQRNNYRGYDGTQNSSRRE--------AAQQTLNKSTTQQ 447

Query: 475 -RQAVREKMQTNPQNQQRREAARERIQSATPEQRQVFKEKVQQRPLNQQQRDNARQRIQS 533
            R  ++ K Q +P +QQ+R+ AR+RI+S+TP+QRQ F+         Q    N      S
Sbjct: 448 HRSELKAKAQQHPVSQQQRDTARQRIESSTPQQRQAFR---------QNMHANVFSGNDS 498

Query: 534 ASPEQRQVFREKVQESRPQRLNDSNHTVRLNNEQRSAVRERLSE 577
            SP           +S+  R  +S     LN EQR+A RE  SE
Sbjct: 499 RSPS---------WQSQQLRGLESRRGSHLNTEQRAAAREHFSE 533