Pairwise Alignments

Query, 107 a.a., regulatory protein SoxS from Escherichia coli ECRC62

Subject, 289 a.a., right oriC-binding transcriptional activator, AraC family from Escherichia coli BL21

 Score =  122 bits (306), Expect = 3e-33
 Identities = 58/104 (55%), Positives = 77/104 (74%)

Query: 1   MSHQKIIQDLIAWIDEHIDQPLNIDVVAKKSGYSKWYLQRMFRTVTHQTLGDYIRQRRLL 60
           M    II+DL+ W++ H+DQPL++D VA K+GYSKW+LQRMF+ VT   +G YIR RRL 
Sbjct: 1   MDQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLS 60

Query: 61  LAAVELRTTERPIFDIAMDLGYVSQQTFSRVFRRQFDRTPSDYR 104
            +AV LR T RPI DIA+   + SQQTF+R F++QF +TP+ YR
Sbjct: 61  KSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYR 104