Pairwise Alignments

Query, 495 a.a., Transcription termination/antitermination protein NusA from Escherichia coli ECRC62

Subject, 493 a.a., transcription elongation factor NusA from Pseudomonas simiae WCS417

 Score =  613 bits (1580), Expect = e-180
 Identities = 318/493 (64%), Positives = 387/493 (78%), Gaps = 3/493 (0%)

Query: 1   MNKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFR 60
           M+KE+L VVE+VSNEK +P   IFEALE ALATATKK++E E+D+RV+I+R +G ++TFR
Sbjct: 1   MSKEVLLVVESVSNEKGVPANVIFEALELALATATKKRFEDEVDLRVEINRHTGAYETFR 60

Query: 61  RWLVVDE--VTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKV 118
           RW VV+E  +  P  E              +GD VE++IES+ F RI  QTAKQVIVQKV
Sbjct: 61  RWTVVEEADLDDPAIETWPSKVAQTHPGAKVGDVVEEKIESIEFGRIAAQTAKQVIVQKV 120

Query: 119 REAERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGDR 178
           REAERA VVD +RE  GEII+G VKKV RDN+ +DLGNNAEA++ RED++ RE FR G R
Sbjct: 121 REAERAQVVDAYRERLGEIISGTVKKVTRDNVIVDLGNNAEALLAREDIISRETFRVGVR 180

Query: 179 VRGVLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAV 238
           +R +L  +R E RG QL ++R+ PEMLIELFRIEVPEI E +IE+ AA+RDPGSRAKIAV
Sbjct: 181 LRALLKEIRTENRGPQLILSRTAPEMLIELFRIEVPEIAEGLIEVMAASRDPGSRAKIAV 240

Query: 239 KTNDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVV 298
           ++ DKRIDP GAC+GMRG+RVQAVS ELGGER+DIVLWDDNPAQFVINAM+PA+VA+I+V
Sbjct: 241 RSKDKRIDPQGACIGMRGSRVQAVSGELGGERVDIVLWDDNPAQFVINAMSPAEVAAIIV 300

Query: 299 DEDKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAIDT 358
           DED H MDIAV A NLAQAIGR GQNVRLASQL+GW LNVMT  D+QAK QAE    +  
Sbjct: 301 DEDAHAMDIAVGADNLAQAIGRGGQNVRLASQLTGWTLNVMTESDIQAKQQAETGDILRN 360

Query: 359 FTKYLDIDEDFATVLVEEGFSTLEELAYVPMKELLEIEGLDEPTVEALRERAKNALATIA 418
           F + L++DED A VLV+EGF++LEE+AYVP++E+L I+G DE TV  LR RAK+ L T A
Sbjct: 361 FIEELEVDEDLAQVLVDEGFTSLEEIAYVPLEEMLNIDGFDEDTVNELRARAKDRLLTKA 420

Query: 419 QAQEESLGDNKPADDLLNLEGVDRDLAFKLAARGVCTLEDLAEQGIDDLADIEGLTDEKA 478
            A EE L D  PA+DLL+LEG+D+DLA +LA RGV T EDLAEQ IDDL DI+G+ D++A
Sbjct: 421 IATEEKLADAHPAEDLLSLEGMDKDLAMELAVRGVITREDLAEQSIDDLLDIDGIDDDRA 480

Query: 479 GALIMAARNICWF 491
           G LIMAAR   WF
Sbjct: 481 GKLIMAAR-AHWF 492