Pairwise Alignments

Query, 495 a.a., Transcription termination/antitermination protein NusA from Escherichia coli ECRC62

Subject, 493 a.a., transcription termination/antitermination L factor from Pseudomonas putida KT2440

 Score =  610 bits (1574), Expect = e-179
 Identities = 315/493 (63%), Positives = 388/493 (78%), Gaps = 3/493 (0%)

Query: 1   MNKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFR 60
           M+KE+L VVE+VSNEK +P   IFEALE ALATATKK++E E+D+RV+I+R +G ++TFR
Sbjct: 1   MSKEVLLVVESVSNEKGVPPGVIFEALEVALATATKKRFEDEVDLRVEINRHTGSYETFR 60

Query: 61  RWLVVDE--VTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKV 118
           RW VVDE  +  P  E  L+  +       +GD +E++IES+ F RI  QTAKQVIVQKV
Sbjct: 61  RWTVVDEADLDDPAIETWLDKIKDTHPEAKVGDVIEEKIESIEFGRIAAQTAKQVIVQKV 120

Query: 119 REAERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGDR 178
           REAERA VVD +RE  GEII+G VKKV RDN+ +DLGNNAEA++ RED++PRE FR G R
Sbjct: 121 REAERAQVVDAYRERVGEIISGTVKKVTRDNVIVDLGNNAEALLAREDIIPRETFRVGVR 180

Query: 179 VRGVLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAV 238
           +R +L  +R E RG QL ++R+ P+MLIELFRIEVPEI E +IE+ AA+RDPGSRAKIAV
Sbjct: 181 LRALLKEIRTENRGPQLILSRTAPQMLIELFRIEVPEIAEGLIEVMAASRDPGSRAKIAV 240

Query: 239 KTNDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVV 298
           ++ DKRIDP GAC+GMRG+RVQAVS ELGGER+DIVLWDDNPAQFVINAM+PA+VA+I+V
Sbjct: 241 RSKDKRIDPQGACIGMRGSRVQAVSGELGGERVDIVLWDDNPAQFVINAMSPAEVAAIIV 300

Query: 299 DEDKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAIDT 358
           DED H MDIAV   NLAQAIGR GQNVRLASQL+GW LNVMT  D+QAK QAE    +  
Sbjct: 301 DEDAHAMDIAVAEDNLAQAIGRGGQNVRLASQLTGWTLNVMTEKDIQAKQQAETGDILRN 360

Query: 359 FTKYLDIDEDFATVLVEEGFSTLEELAYVPMKELLEIEGLDEPTVEALRERAKNALATIA 418
           F + L++DE+ A VLV+EGF++LEE+AYVP++E+L I+G DE  V  LR RAK+ L T A
Sbjct: 361 FIEELEVDEELAQVLVDEGFTSLEEIAYVPLEEMLNIDGFDEDIVNELRARAKDRLLTKA 420

Query: 419 QAQEESLGDNKPADDLLNLEGVDRDLAFKLAARGVCTLEDLAEQGIDDLADIEGLTDEKA 478
            A EE L D  PA+DLL+LEG+D+DLA +LA RGV   EDLAEQ IDDL DI+G+ +E+A
Sbjct: 421 IATEEKLADAHPAEDLLSLEGMDKDLAAELAVRGVVNREDLAEQSIDDLLDIDGIDEERA 480

Query: 479 GALIMAARNICWF 491
           G LIMAAR   WF
Sbjct: 481 GKLIMAAR-AHWF 492