Pairwise Alignments

Query, 495 a.a., Transcription termination/antitermination protein NusA from Escherichia coli ECRC62

Subject, 499 a.a., Transcription termination protein NusA from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score =  476 bits (1226), Expect = e-139
 Identities = 251/498 (50%), Positives = 347/498 (69%), Gaps = 6/498 (1%)

Query: 1   MNKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFR 60
           MN+E+L +++A+S EK + R+ +  A+E ALA+ATKK Y+ ++D+RV +D  +G ++TFR
Sbjct: 1   MNREMLMLIDAISREKNVERDVVLGAVELALASATKKLYKGDVDIRVAMDPDTGAYETFR 60

Query: 61  RWLVVDE---VTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQK 117
           RWLVV +   +  P  E  L  AR E   +  GDY+E  +ESV   RI    AKQVI+QK
Sbjct: 61  RWLVVPDEAGLQNPDAEEMLSDAREELADIEEGDYIEKPVESVPIGRIGAMAAKQVILQK 120

Query: 118 VREAERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGD 177
           +R+AER M+++ F     +I  G VK++++ ++ ++ G   E  + R +M+P+ENFR GD
Sbjct: 121 IRDAEREMLLNDFMSRGDKIFVGTVKRMDKGDLIVESGR-VEGRLKRGEMIPKENFRTGD 179

Query: 178 RVRGVLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIA 237
           RVR ++  V    RGA + ++RS P  +IELFR EVPEI + ++EIK  ARDPGSRAKIA
Sbjct: 180 RVRAMIMEVDLTLRGAPILLSRSAPSFMIELFRQEVPEIEQGLLEIKTCARDPGSRAKIA 239

Query: 238 VKTNDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIV 297
           V + DKRIDP+G CVG+RG+RV  V+ EL GER+DIVLW ++PAQFVI A+APA+V SIV
Sbjct: 240 VHSFDKRIDPIGTCVGVRGSRVNGVTNELAGERVDIVLWSEDPAQFVIGALAPANVVSIV 299

Query: 298 VDEDKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAID 357
           VDE++H MD+ V+  NLA AIGR GQNVRLAS+L+GW +N+MT D+   K   EA     
Sbjct: 300 VDEERHAMDVVVDEENLAIAIGRGGQNVRLASELTGWRINIMTADESAQKQAEEADGIRK 359

Query: 358 TFTKYLDIDEDFATVLVEEGFSTLEELAYVPMKELLEIEGLDEPTVEALRERAKNALATI 417
            F   LD+D++ A +L+EEGF++LEE+AYVP++E+LEIE  DE TV  LR RAK+AL T+
Sbjct: 360 VFMAKLDVDQEIADILIEEGFTSLEEVAYVPLQEMLEIESFDEDTVNELRTRAKDALLTM 419

Query: 418 AQAQEESLGDNKPADDLLNLEGVDRDLAFKLAARGVCTLEDLAEQGIDDLADIEGLTDEK 477
             A+EES+   + + DL +LEGV  +L  KLA  GV T ++LA+   D+L DI   T E+
Sbjct: 420 EIAREESV--EEVSQDLRDLEGVTPELIAKLADAGVHTRDELADLATDELTDITAQTPEE 477

Query: 478 AGALIMAARNICWFGDEA 495
           A ALIM AR   + GDEA
Sbjct: 478 ATALIMLARAHWFTGDEA 495