Pairwise Alignments

Query, 495 a.a., Transcription termination/antitermination protein NusA from Escherichia coli ECRC62

Subject, 500 a.a., Transcription termination protein NusA from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score =  912 bits (2358), Expect = 0.0
 Identities = 469/500 (93%), Positives = 487/500 (97%), Gaps = 5/500 (1%)

Query: 1   MNKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFR 60
           MNKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRV+IDRKSGDFDTFR
Sbjct: 1   MNKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVEIDRKSGDFDTFR 60

Query: 61  RWLVVDEVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVRE 120
           RWL+V+EVT PTKEITLEAAR+EDESLN+GDYVEDQIESVTFDRITTQTAKQVIVQKVRE
Sbjct: 61  RWLIVEEVTMPTKEITLEAARFEDESLNVGDYVEDQIESVTFDRITTQTAKQVIVQKVRE 120

Query: 121 AERAMVVDQFREHEGEIITGVVKKVNRDNISLDL-----GNNAEAVILREDMLPRENFRP 175
           AERAMVVDQFR+ EGEI+TGVVKKVNRDNISL++       NAEAVILREDMLPRENFRP
Sbjct: 121 AERAMVVDQFRDQEGEIVTGVVKKVNRDNISLEIKSEGMAGNAEAVILREDMLPRENFRP 180

Query: 176 GDRVRGVLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAK 235
           GDR+RGVLY+VRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAK
Sbjct: 181 GDRIRGVLYAVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAK 240

Query: 236 IAVKTNDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVAS 295
           IAVKTNDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVAS
Sbjct: 241 IAVKTNDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVAS 300

Query: 296 IVVDEDKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAA 355
           IVVDEDKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAA
Sbjct: 301 IVVDEDKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAA 360

Query: 356 IDTFTKYLDIDEDFATVLVEEGFSTLEELAYVPMKELLEIEGLDEPTVEALRERAKNALA 415
           I+ FTKYLDIDE+FATVLVEEGFSTLEELAYVPMKELLEI+GLDEPTVEALRERAKNALA
Sbjct: 361 IEIFTKYLDIDEEFATVLVEEGFSTLEELAYVPMKELLEIDGLDEPTVEALRERAKNALA 420

Query: 416 TIAQAQEESLGDNKPADDLLNLEGVDRDLAFKLAARGVCTLEDLAEQGIDDLADIEGLTD 475
           T+AQ QE SLGDNKPADDLLNLEG+DRD+AFKLAARGVCTLEDLA+QGIDDLADIEGLTD
Sbjct: 421 TLAQDQEASLGDNKPADDLLNLEGLDRDMAFKLAARGVCTLEDLADQGIDDLADIEGLTD 480

Query: 476 EKAGALIMAARNICWFGDEA 495
           EKAG LIMAARNICWFGDEA
Sbjct: 481 EKAGELIMAARNICWFGDEA 500