Pairwise Alignments

Query, 495 a.a., Transcription termination/antitermination protein NusA from Escherichia coli ECRC62

Subject, 538 a.a., N-utilization substance protein A from Agrobacterium fabrum C58

 Score =  400 bits (1027), Expect = e-116
 Identities = 207/476 (43%), Positives = 302/476 (63%), Gaps = 4/476 (0%)

Query: 4   EILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFRRWL 63
           E+L + +AV+ EK + RE +  A+  A+  A + +Y  E ++R  I+ K+G+    R   
Sbjct: 9   ELLQIADAVAREKVIDREIVLAAMADAIQKAARSRYGSETNIRADINSKTGEIRLQRLLE 68

Query: 64  VVDEVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVREAER 123
           VV+     + +I LE AR  +    LGD++ D +  + F RI  Q+AKQVIVQKVREAER
Sbjct: 69  VVEAAEDYSTQIPLELARDRNPDAKLGDFIADPLPPMDFGRIAAQSAKQVIVQKVREAER 128

Query: 124 AMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGDRVRGVL 183
               D+F++  GEI+ G VK+V   N+ +DLG   E +I R++M+PREN R GDRVR  +
Sbjct: 129 DRQYDEFKDRIGEIVNGTVKRVEYGNVIVDLGRG-EGIIRRDEMIPRENMRYGDRVRAYV 187

Query: 184 YSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKTNDK 243
           Y VR E RG Q+F++R+ P+ +++LF +EVPEI + +I+IK+ ARDPGSRAKIAV +ND 
Sbjct: 188 YDVRREQRGPQIFLSRTHPQFMVKLFTMEVPEIYDGIIQIKSVARDPGSRAKIAVISNDS 247

Query: 244 RIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDEDKH 303
            IDPVGACVGMRG+RVQAV  EL GE+IDI+ W   PA F++NA+ PA+VA +V+DE+  
Sbjct: 248 SIDPVGACVGMRGSRVQAVVGELQGEKIDIIPWSQEPASFIVNALQPAEVAKVVLDEESE 307

Query: 304 TMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAIDTFTKYL 363
            +++ V    L+ AIGR GQNVRLASQL+GW++++MT  +   + Q E +     F + L
Sbjct: 308 RIEVVVPDEQLSLAIGRRGQNVRLASQLTGWDIDIMTEQEESERRQKEFNERTALFMEAL 367

Query: 364 DIDEDFATVLVEEGFSTLEELAYVPMKELLEIEGLDEPTVEALRERAKNALATIAQAQEE 423
           D+DE    VL  EGF+ +EELAYV + E+  I+G DE T + ++ RA+  L  +    + 
Sbjct: 368 DVDEMVGQVLASEGFAQVEELAYVDLDEITSIDGFDEDTADEIQTRAREYLERLEAEMDA 427

Query: 424 SLGDNKPADDLLNLEGVDRDLAFKLAARGVCTLEDLAEQGIDDLADIEGLTDEKAG 479
              +    D+L  ++G+   +   L   G+ T+ED A    DDL    G ++ K G
Sbjct: 428 KRKELGVTDELRQIDGLTSQMMVALGEDGIKTIEDFAGCAADDLV---GWSERKDG 480



 Score = 30.0 bits (66), Expect = 2e-04
 Identities = 31/109 (28%), Positives = 51/109 (46%), Gaps = 13/109 (11%)

Query: 391 ELLEIEGLDEPTVEALRERAKNA-LAT--------IAQAQEESLGDNKPADD--LLNLEG 439
           E +E+   DE    A+  R +N  LA+        I   QEES    K  ++   L +E 
Sbjct: 307 ERIEVVVPDEQLSLAIGRRGQNVRLASQLTGWDIDIMTEQEESERRQKEFNERTALFMEA 366

Query: 440 VDRD--LAFKLAARGVCTLEDLAEQGIDDLADIEGLTDEKAGALIMAAR 486
           +D D  +   LA+ G   +E+LA   +D++  I+G  ++ A  +   AR
Sbjct: 367 LDVDEMVGQVLASEGFAQVEELAYVDLDEITSIDGFDEDTADEIQTRAR 415